Factsheet for PGSC0003DMT400015827

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015825	Potato	cytosol	86.08	87.18
Solyc01g111640.2.1	Tomato	cytosol	86.08	86.08
PGSC0003DMT400068727	Potato	cytosol	79.11	83.33
PGSC0003DMT400024783	Potato	cytosol	77.22	81.33
PGSC0003DMT400068720	Potato	cytosol	75.95	80.54
PGSC0003DMT400068726	Potato	cytosol	72.78	76.67
GSMUA_Achr8P13060_001	Banana	cytosol	74.68	70.24
PGSC0003DMT400088621	Potato	cytosol	42.41	57.27
PGSC0003DMT400094745	Potato	cytosol	37.34	56.19
PGSC0003DMT400038385	Potato	cytosol	53.16	55.63
PGSC0003DMT400090609	Potato	cytosol	53.16	55.63
PGSC0003DMT400093573	Potato	cytosol	52.53	54.97
PGSC0003DMT400088820	Potato	cytosol	51.9	54.3
PGSC0003DMT400088220	Potato	cytosol	50.63	52.98
PGSC0003DMT400097239	Potato	cytosol	50.0	52.32
PGSC0003DMT400087694	Potato	cytosol	48.73	51.33
PGSC0003DMT400093419	Potato	cytosol	48.73	50.99
PGSC0003DMT400085217	Potato	cytosol	40.51	49.23
PGSC0003DMT400086770	Potato	cytosol	37.97	47.62
PGSC0003DMT400096238	Potato	cytosol	44.3	46.98
PGSC0003DMT400088079	Potato	cytosol	33.54	46.09
PGSC0003DMT400093338	Potato	cytosol	48.1	45.24
PGSC0003DMT400085417	Potato	cytosol	36.08	45.24
PGSC0003DMT400091657	Potato	cytosol	44.3	44.3
PGSC0003DMT400095953	Potato	cytosol	44.3	44.3
PGSC0003DMT400090072	Potato	cytosol	27.85	43.14
PGSC0003DMT400019185	Potato	cytosol	46.2	40.56
PGSC0003DMT400089461	Potato	cytosol	32.28	40.16
PGSC0003DMT400096074	Potato	cytosol	40.51	37.21
PGSC0003DMT400019237	Potato	cytosol	40.51	33.86

Protein Annotations

EntrezGene:102601655	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1A6N5	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400006185	PGSC:PGSC0003DMG400006185	EnsemblPlants:PGSC0003DMT400015827	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF88
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000296A7A3	RefSeq:XP_006359704.1	SEG:seg

Description

Skp1 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006185]

Coordinates

chr1:+:87619565..87621021

Molecular Weight (calculated)

17762.9 Da

IEP (calculated)

4.227

GRAVY (calculated)

-0.327

Length

158 amino acids

Sequence
(BLAST)

001: MSSLKKISLR SSDGEVFEVE EAVALESQTI KFLIEDDCAG SDIPISNVTS NILAKVLEYL KRHVEADDKA ADDKAAADND LKVFDAEFVK VDQKTLFDLI
101: LAANYLNIKG LLDLTCQTVA DMIKGKTPEE IRKTFNIKND FTPEEEEEVR RENAWAFE

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.