Factsheet for PGSC0003DMT400085217

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088079	Potato	cytosol	79.23	89.57
PGSC0003DMT400086770	Potato	cytosol	81.54	84.13
PGSC0003DMT400085417	Potato	cytosol	77.69	80.16
PGSC0003DMT400038385	Potato	cytosol	91.54	78.81
PGSC0003DMT400093573	Potato	cytosol	90.0	77.48
PGSC0003DMT400090609	Potato	cytosol	88.46	76.16
PGSC0003DMT400088820	Potato	cytosol	86.92	74.83
PGSC0003DMT400087694	Potato	cytosol	85.38	74.0
PGSC0003DMT400093419	Potato	cytosol	85.38	73.51
PGSC0003DMT400088220	Potato	cytosol	84.62	72.85
PGSC0003DMT400097239	Potato	cytosol	83.08	71.52
PGSC0003DMT400088621	Potato	cytosol	62.31	69.23
Solyc03g093190.1.1	Tomato	cytosol	63.08	67.21
PGSC0003DMT400096238	Potato	cytosol	67.69	59.06
PGSC0003DMT400093338	Potato	cytosol	64.62	50.0
PGSC0003DMT400090072	Potato	cytosol	36.92	47.06
PGSC0003DMT400068727	Potato	cytosol	53.85	46.67
TraesCS4A01G366400.1	Wheat	cytosol	57.69	45.73
PGSC0003DMT400024783	Potato	cytosol	52.31	45.33
TraesCS2D01G560400.1	Wheat	cytosol	56.92	45.12
TraesCS2D01G560500.1	Wheat	cytosol	56.92	45.12
TraesCS5B01G474100.1	Wheat	cytosol	56.15	45.06
PGSC0003DMT400068726	Potato	cytosol	51.54	44.67
TraesCS2D01G560700.1	Wheat	cytosol	56.15	44.51
PGSC0003DMT400015825	Potato	cytosol	53.08	44.23
TraesCS2D01G560300.1	Wheat	cytosol	55.38	43.9
HORVU5Hr1G110790.1	Barley	cytosol	34.62	43.69
PGSC0003DMT400068720	Potato	cytosol	50.0	43.62
TraesCS6D01G045500.1	Wheat	cytosol	56.15	43.2
TraesCS6A01G000300.1	Wheat	cytosol	53.85	42.94
TraesCS6B01G004300.1	Wheat	cytosol	53.85	42.94
TraesCS2D01G420100.1	Wheat	cytosol	57.69	42.86
TraesCS5D01G475600.1	Wheat	cytosol	57.69	42.86
TraesCS3B01G566400.1	Wheat	cytosol	46.92	42.66
TraesCS7D01G016900.1	Wheat	cytosol	55.38	42.6
OQU87046	Sorghum	cytosol	43.85	42.54
TraesCS5A01G462800.1	Wheat	cytosol	43.85	42.54
TraesCS2B01G590600.1	Wheat	cytosol	56.92	42.53
TraesCS3B01G308600.1	Wheat	cytosol	53.08	42.33
TraesCS4A01G472600.1	Wheat	cytosol	55.38	41.86
TraesCS7A01G020600.1	Wheat	cytosol	55.38	41.86
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	56.15	41.71
TraesCS7D01G194900.1	Wheat	cytosol	56.15	41.71
TraesCS3D01G509600.1	Wheat	cytosol	54.62	41.28
TraesCS7B01G098900.1	Wheat	cytosol	55.38	41.14
Os11t0456300-01	Rice	plasma membrane	54.62	41.04
EES09697	Sorghum	cytosol	55.38	40.91
Zm00001d049230_P001	Maize	mitochondrion	55.38	40.91
TraesCS6B01G053400.1	Wheat	cytosol	43.08	40.88
EES06093	Sorghum	cytosol	53.08	40.83
TraesCS6D01G001600.1	Wheat	cytosol	54.62	40.57
PGSC0003DMT400015827	Potato	cytosol	49.23	40.51
HORVU5Hr1G110810.1	Barley	cytosol	47.69	40.26
PGSC0003DMT400094745	Potato	cytosol	32.31	40.0
EES13900	Sorghum	cytosol	51.54	39.88
HORVU5Hr1G110840.1	Barley	cytosol	53.08	39.2
TraesCS2B01G442100.1	Wheat	mitochondrion	53.08	38.76
HORVU5Hr1G110800.1	Barley	cytosol	52.31	38.2
HORVU5Hr1G110820.2	Barley	cytosol	52.31	38.2
HORVU5Hr1G110850.1	Barley	cytosol	52.31	38.2
TraesCS7A01G498800.1	Wheat	cytosol	48.46	38.18
HORVU5Hr1G110830.3	Barley	cytosol	52.31	37.99
TraesCS6D01G044400.1	Wheat	cytosol	39.23	37.78
HORVU5Hr1G110760.2	Barley	cytosol	46.15	37.74
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	50.77	37.71
TraesCS2D01G524400.1	Wheat	cytosol	46.92	37.65
HORVU5Hr1G090360.1	Barley	cytosol	51.54	37.64
HORVU5Hr1G110720.2	Barley	cytosol	51.54	37.64
TraesCS2A01G522300.1	Wheat	cytosol	50.77	37.5
EER99267	Sorghum	cytosol	49.23	36.99
TraesCS7A01G193600.1	Wheat	cytosol	38.46	36.76
PGSC0003DMT400096074	Potato	cytosol	48.46	36.63
CDY03015	Canola	cytosol	42.31	36.42
VIT_15s0045g00490.t01	Wine grape	cytosol	42.31	36.42
HORVU2Hr1G115410.2	Barley	cytosol	46.92	36.31
HORVU2Hr1G115400.1	Barley	cytosol	49.23	36.16
PGSC0003DMT400095953	Potato	cytosol	43.85	36.08
HORVU2Hr1G115380.1	Barley	cytosol	49.23	35.56
TraesCS4B01G337400.1	Wheat	cytosol	43.08	35.44
HORVU7Hr1G099950.1	Barley	cytosol	46.92	35.26
HORVU2Hr1G115420.1	Barley	cytosol	47.69	35.03
TraesCS4A01G379700.1	Wheat	cytosol	40.0	34.9
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	46.92	34.86
HORVU3Hr1G089860.3	Barley	cytosol	47.69	34.44
HORVU7Hr1G103140.2	Barley	cytosol	47.69	34.44
TraesCS3A01G374400.1	Wheat	cytosol	43.08	34.36
TraesCS7D01G544900.1	Wheat	cytosol	37.69	34.27
TraesCS7D01G545000.2	Wheat	cytosol	44.62	33.92
HORVU7Hr1G002220.1	Barley	cytosol, plastid	54.62	33.81
TraesCS3B01G406500.1	Wheat	cytosol	42.31	33.74
HORVU7Hr1G099840.1	Barley	cytosol	45.38	33.71
TraesCS5B01G165700.1	Wheat	cytosol	45.38	33.71
TraesCS6D01G002600.1	Wheat	cytosol	45.38	33.71
TraesCS7A01G565800.1	Wheat	cytosol	45.38	33.52
TraesCS7B01G492200.1	Wheat	cytosol	45.38	33.52
TraesCS7B01G492300.1	Wheat	cytosol	45.38	33.52
TraesCS7B01G492500.1	Wheat	cytosol	45.38	33.52
TraesCS5D01G105800.1	Wheat	cytosol	36.92	32.88
PGSC0003DMT400019185	Potato	cytosol	45.38	32.78
TraesCS5A01G093500.1	Wheat	cytosol	41.54	32.73
TraesCS5B01G099600.1	Wheat	cytosol	43.85	32.57
Os08t0375500-00	Rice	cytosol	42.31	32.54
Os08t0375700-00	Rice	cytosol	42.31	32.54
TraesCS7B01G492400.1	Wheat	cytosol	43.85	32.39
Os09t0273800-01	Rice	cytosol	41.54	32.34
PGSC0003DMT400091657	Potato	cytosol	39.23	32.28
TraesCS5D01G173200.1	Wheat	cytosol	44.62	32.22
TraesCS6A01G017300.1	Wheat	cytosol	38.46	32.05
TraesCS6D01G020500.1	Wheat	cytosol	38.46	32.05
TraesCS6B01G008800.1	Wheat	cytosol	43.08	32.0
Zm00001d007590_P001	Maize	cytosol	46.15	31.91
TraesCS5A01G168900.1	Wheat	cytosol	44.62	31.87
TraesCS7A01G565700.1	Wheat	cytosol	41.54	31.58
TraesCS5D01G379900.1	Wheat	cytosol	35.38	31.29
Zm00001d007659_P001	Maize	cytosol	46.15	31.25
TraesCS2A01G574500.1	Wheat	cytosol	40.0	30.95
Zm00001d007589_P001	Maize	cytosol	46.15	30.93
VIT_10s0003g05820.t01	Wine grape	cytosol	38.46	30.86
Os09t0274800-00	Rice	cytosol	40.77	30.81
Zm00001d007586_P001	Maize	cytosol	45.38	30.73
HORVU7Hr1G099790.1	Barley	cytosol, plastid	46.15	30.46
Zm00001d022618_P001	Maize	cytosol	40.0	30.41
TraesCS6B01G024700.1	Wheat	cytosol	39.23	30.36
TraesCS6A01G016900.1	Wheat	cytosol	41.54	30.34
TraesCS3B01G092200.1	Wheat	cytosol	38.46	30.12
TraesCS5A01G172300.1	Wheat	cytosol	45.38	29.95
VIT_19s0085g00190.t01	Wine grape	cytosol	36.15	29.94
Os07t0625500-01	Rice	cytosol	40.0	29.89
Os07t0625600-00	Rice	cytosol	40.77	29.78
Os09t0412050-00	Rice	cytosol	38.46	29.76
VIT_19s0085g00180.t01	Wine grape	cytosol	34.62	29.61
TraesCS5D01G176900.1	Wheat	cytosol	44.62	29.59
TraesCS3D01G077800.1	Wheat	cytosol	37.69	29.17
PGSC0003DMT400089461	Potato	cytosol	28.46	29.13
GSMUA_Achr4P25740_001	Banana	cytosol	33.08	29.05
TraesCS5B01G169700.1	Wheat	cytosol	44.62	29.0
Os06t0113800-00	Rice	cytosol	36.92	28.92
TraesCS1D01G201900.1	Wheat	cytosol	36.92	28.92
PGSC0003DMT400019237	Potato	cytosol	41.54	28.57
TraesCS5B01G372700.1	Wheat	cytosol	35.38	28.4
Os09t0275200-01	Rice	cytosol	33.85	27.5
HORVU5Hr1G092210.1	Barley	cytosol	33.85	27.33
OQU76826	Sorghum	cytosol	36.15	27.17
Os02t0101600-00	Rice	cytosol	32.31	26.09
GSMUA_Achr4P25750_001	Banana	cytosol	34.62	25.42
KRH13748	Soybean	cytosol	34.62	24.59
Os07t0624900-00	Rice	cytosol	36.92	24.0
Zm00001d042677_P001	Maize	plastid	48.46	23.86
Os10t0438100-00	Rice	cytosol	36.92	21.82
TraesCS1B01G156000.1	Wheat	cytosol	37.69	20.76
TraesCS1A01G129800.1	Wheat	cytosol	36.92	20.34
TraesCS1D01G138400.1	Wheat	cytosol	36.92	20.17
HORVU1Hr1G035930.1	Barley	cytosol	36.15	19.42
EER94185	Sorghum	cytosol	30.77	18.96
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	35.38	18.25
OQU90298	Sorghum	cytosol	40.0	14.9
TraesCS3B01G340200.1	Wheat	cytosol	34.62	10.79
TraesCS3A01G297000.1	Wheat	cytosol	39.23	9.62
TraesCS3D01G305500.1	Wheat	cytosol	37.69	9.59
TraesCS3B01G340100.1	Wheat	nucleus	33.08	8.27

Protein Annotations

EntrezGene:102588017	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1D904	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400034788	PGSC:PGSC0003DMG400034788	EnsemblPlants:PGSC0003DMT400085217	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF88
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000295E747	RefSeq:XP_015164134.1	:

Description

SKP1 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400034788]

Coordinates

chr2:+:34652322..34652714

Molecular Weight (calculated)

14943.0 Da

IEP (calculated)

4.864

GRAVY (calculated)

-0.334

Length

130 amino acids

Sequence
(BLAST)

001: MSSSTKFLTL KTCDGEEFII DEAIAVRSQT IKNMVEDDCV SNVIPLPNVD SKTTTKVIDY SKKHSEEDVS KDMLMEFDKT FVKVHHSIMH ALILAANFLN
101: DKEILDMMCQ EVADRIKRKT PEEIRKEFDI

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.