CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049230_P001	Maize	mitochondrion	99.43	99.43
Os11t0456300-01	Rice	plasma membrane	93.18	94.8
EES06093	Sorghum	cytosol	85.23	88.76
OQU87046	Sorghum	cytosol	67.05	88.06
EES13900	Sorghum	cytosol	79.55	83.33
EER99267	Sorghum	cytosol	68.75	69.94
PGSC0003DMT400088621	Potato	cytosol	41.48	62.39
Solyc03g112710.1.1	Tomato	cytosol	52.84	61.59
PGSC0003DMT400093573	Potato	cytosol	52.27	60.93
PGSC0003DMT400090609	Potato	cytosol	52.27	60.93
PGSC0003DMT400038385	Potato	cytosol	52.27	60.93
PGSC0003DMT400088820	Potato	cytosol	51.14	59.6
CDY03015	Canola	cytosol	50.57	58.94
PGSC0003DMT400088220	Potato	cytosol	50.0	58.28
PGSC0003DMT400093419	Potato	cytosol	49.43	57.62
PGSC0003DMT400087694	Potato	cytosol	48.3	56.67
PGSC0003DMT400097239	Potato	cytosol	48.3	56.29
PGSC0003DMT400085217	Potato	cytosol	40.91	55.38
VIT_19s0085g00180.t01	Wine grape	cytosol	47.16	54.61
PGSC0003DMT400088079	Potato	cytosol	34.66	53.04
PGSC0003DMT400086770	Potato	cytosol	37.5	52.38
PGSC0003DMT400096238	Potato	cytosol	43.18	51.01
PGSC0003DMT400085417	Potato	cytosol	36.36	50.79
Solyc11g008230.1.1	Tomato	cytosol	45.45	50.63
VIT_15s0045g00490.t01	Wine grape	cytosol	43.18	50.33
PGSC0003DMT400090072	Potato	cytosol	28.98	50.0
OQU76826	Sorghum	cytosol	48.86	49.71
VIT_10s0003g05820.t01	Wine grape	cytosol	45.45	49.38
GSMUA_Achr4P25740_001	Banana	cytosol	41.48	49.32
PGSC0003DMT400095953	Potato	cytosol	43.18	48.1
PGSC0003DMT400093338	Potato	cytosol	44.89	47.02
PGSC0003DMT400091657	Potato	cytosol	42.05	46.84
VIT_19s0085g00190.t01	Wine grape	cytosol	41.48	46.5
PGSC0003DMT400019185	Potato	cytosol	47.16	46.11
Solyc03g093190.1.1	Tomato	cytosol	31.82	45.9
Solyc11g008400.1.1	Tomato	cytosol	46.59	45.56
GSMUA_Achr4P25750_001	Banana	cytosol	43.75	43.5
Solyc11g008240.1.1	Tomato	cytosol	38.64	43.04
PGSC0003DMT400089461	Potato	cytosol	30.68	42.52
KRH13748	Soybean	cytosol	42.05	40.44
PGSC0003DMT400096074	Potato	cytosol	36.93	37.79
PGSC0003DMT400019237	Potato	cytosol	38.07	35.45
Solyc11g008420.1.1	Tomato	cytosol	35.23	32.8
EER94185	Sorghum	cytosol	38.64	32.23
OQU90298	Sorghum	cytosol	48.3	24.36

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EntrezGene:8064413	UniProt:C5Y273	EnsemblPlants:EES09697	ProteinID:EES09697
ProteinID:EES09697.1	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	EnsemblPlantsGene:SORBI_3005G111100
SUPFAM:SSF54695	SUPFAM:SSF81382	unigene:Sbi.14099	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000189D80F
RefSeq:XP_002450709.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:35838248..35841051

Molecular Weight (calculated)

19239.5 Da

IEP (calculated)

4.238

GRAVY (calculated)

-0.381

Length

176 amino acids

Sequence
(BLAST)

001: MAAEGEKKMI TLKSSDGEEF EVEEAVAMES QTIRHMIEDD CADNGIPLPN VNSKILSKVI EYCNKHVHAA AAAAAASKAG SDDVGAAAAN STAASGEDLK
101: NWDADFVKVD QATLFDLILA ANYLNIKGLL DLTCQTVADM IKGKTPEEIR KTFNIKNDFT PEEEEEIRRE NQWAFE

Best Arabidopsis Sequence Match ( AT5G42190.1 )
(BLAST)

001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E

Arabidopsis Description

SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.