Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g035910.1.1 | Tomato | cytosol | 13.24 | 77.55 |
| Solyc02g050290.1.1 | Tomato | cytosol | 18.82 | 49.54 |
| Solyc10g048130.1.1 | Tomato | mitochondrion, plastid | 6.97 | 20.41 |
| Solyc04g049870.1.1 | Tomato | cytosol | 10.45 | 14.71 |
| Solyc03g013380.1.1 | Tomato | extracellular, vacuole | 0.0 | 0.0 |
| Solyc06g065880.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g029270.1.1 | Tomato | cytosol, extracellular, mitochondrion, plasma membrane | 0.0 | 0.0 |
| Solyc11g063630.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc12g035900.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:2.4.4.2.3.2 | InterPro:Cyt_c_assembly | InterPro:Cyt_c_biogenesis | InterPro:Cyt_c_biogenesis_plant | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015232 |
| GO:GO:0015886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0017004 | GO:GO:0020037 |
| UniProt:K4D974 | PFAM:PF01578 | PRINTS:PR01410 | PRINTS:PR01412 | PANTHER:PTHR30009 | PANTHER:PTHR30009:SF23 |
| EnsemblPlantsGene:Solyc11g063620.1 | EnsemblPlants:Solyc11g063620.1.1 | TMHMM:TMhelix | UniParc:UPI0002769694 | : | : |
Description
No Description!
Coordinates
chr11:+:49644807..49645670
Molecular Weight (calculated)
32852.5 Da
IEP (calculated)
10.168
GRAVY (calculated)
-0.155
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGITKKKFGN EHEMSIYELF HYSLFPGLFV AFTYNKKQQP VFGAALAFWC ILISFLGLSF RHIPNNLSNY NVLTANAPFF FQISRIWSNH EGSILSWCWI
101: LSFCGFLLCY WGRPLSHNVS KRGAESHLTV RRGGHRESSF YSFVSNFVKN SILSLSRYEQ KSGMKSQLYT PFVLRTLVDS KLRSQRKQTF DGPALFYAPL
201: YPQRKMSFAL LGARRSRGSR EGKRMLHLAR DDKERASSID EQRIDGALGI ALFFSPFLSA GSDPFVQNFF VCTELLGESN PVQQDPI
101: LSFCGFLLCY WGRPLSHNVS KRGAESHLTV RRGGHRESSF YSFVSNFVKN SILSLSRYEQ KSGMKSQLYT PFVLRTLVDS KLRSQRKQTF DGPALFYAPL
201: YPQRKMSFAL LGARRSRGSR EGKRMLHLAR DDKERASSID EQRIDGALGI ALFFSPFLSA GSDPFVQNFF VCTELLGESN PVQQDPI
001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
Arabidopsis Description
CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.