Factsheet for Solyc04g049870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2
plasma membrane 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g035910.1.1	Tomato	cytosol	11.27	46.94
Solyc11g063630.1.1	Tomato	mitochondrion	51.47	38.6
Solyc02g050290.1.1	Tomato	cytosol	17.65	33.03
HORVU4Hr1G044830.1	Barley	mitochondrion, plasma membrane, vacuole	13.73	32.18
TraesCS1B01G457900.1	Wheat	mitochondrion	45.59	31.53
Solyc08g029270.1.1	Tomato	cytosol, extracellular, mitochondrion, plasma membrane	9.31	27.94
Solyc03g013380.1.1	Tomato	extracellular, vacuole	5.88	16.22
Solyc06g065880.1.1	Tomato	cytosol	5.39	15.94
Solyc12g035900.1.1	Tomato	cytosol	10.29	12.14
Solyc11g063620.1.1	Tomato	plasma membrane	14.71	10.45
HORVU4Hr1G044820.1	Barley	plastid	3.43	8.43
Solyc10g048130.1.1	Tomato	mitochondrion, plastid	3.43	7.14
HORVU7Hr1G086940.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
HORVU6Hr1G024690.1	Barley	endoplasmic reticulum, extracellular, vacuole	0.0	0.0
HORVU5Hr1G112980.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
TraesCS1B01G457800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
HORVU4Hr1G044810.1	Barley	vacuole	0.0	0.0
TraesCS3B01G374000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc04g049870.1.1	EnsemblPlantsGene:Solyc04g049870.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015232	GO:GO:0015886	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0017004	InterPro:Cyt_c_biogenesis	PANTHER:PTHR43653	PANTHER:PTHR43653:SF1	PRINTS:PR01410
SEG:seg	TMHMM:TMhelix	UniParc:UPI00027669EB	UniProt:K4BRW1	MapMan:2.4.4.2.3.2	:

Description

No Description!

Coordinates

chr4:+:43948371..43949339

Molecular Weight (calculated)

23916.3 Da

IEP (calculated)

8.501

GRAVY (calculated)

0.219

Length

204 amino acids

Sequence
(BLAST)

001: MLHLEQDDKE RASSIDEQPI DEALGISLFF SPFLLDCGTP LAAYAKGCRP KEWNIVLLCW TRRSRITSEL FTLKFNHVRA KFYPTLLLHS DRSLLMLLRR
101: HFFALSSLWI GTLVATGREK AKRIERKIPL LCIFQRSWPA YHELGRGGWW FWDTVENAFL CLGTFLIRSG LLALFHSFVI DDTQGIFLWW FFFLMTEISM
201: ILFS

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.