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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 2
  • vacuole 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g050290.1.1 Tomato cytosol 81.63 36.7
Solyc11g063620.1.1 Tomato plasma membrane 77.55 13.24
Solyc04g049870.1.1 Tomato cytosol 46.94 11.27
HORVU4Hr1G044820.1 Barley plastid 10.2 6.02
TraesCS3B01G374000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 0.0 0.0
HORVU4Hr1G044810.1 Barley vacuole 0.0 0.0
TraesCS1B01G457900.1 Wheat mitochondrion 0.0 0.0
TraesCS1B01G457800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 0.0 0.0
Solyc12g035900.1.1 Tomato cytosol 0.0 0.0
Solyc11g063630.1.1 Tomato mitochondrion 0.0 0.0
Solyc10g048130.1.1 Tomato mitochondrion, plastid 0.0 0.0
Solyc08g029270.1.1 Tomato cytosol, extracellular, mitochondrion, plasma membrane 0.0 0.0
Solyc06g065880.1.1 Tomato cytosol 0.0 0.0
Solyc03g013380.1.1 Tomato extracellular, vacuole 0.0 0.0
HORVU7Hr1G086940.1 Barley endoplasmic reticulum, plasma membrane, vacuole 0.0 0.0
HORVU6Hr1G024690.1 Barley endoplasmic reticulum, extracellular, vacuole 0.0 0.0
HORVU5Hr1G112980.1 Barley endoplasmic reticulum, plasma membrane, vacuole 0.0 0.0
HORVU4Hr1G044830.1 Barley mitochondrion, plasma membrane, vacuole 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc12g035910.1.1EnsemblPlantsGene:Solyc12g035910.1GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR30009
PANTHER:PTHR30009:SF23TMHMM:TMhelixUniParc:UPI000276A004UniProt:K4DE48MapMan:2.4.4.2.3.2:
Description
No Description!
Coordinates
chr12:+:54279711..54279860
Molecular Weight (calculated)
5698.9 Da
IEP (calculated)
4.757
GRAVY (calculated)
0.212
Length
49 amino acids
Sequence
(BLAST)
1: MLHQARDDKE RSLSIDEQMI DGALGIAFFL YHFLSVGFDP FVRNFFVCT
Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)
001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
Arabidopsis Description
CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.