Factsheet for TraesCS2A01G143200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G168300.1	Wheat	mitochondrion	92.07	93.66
TraesCS2D01G146500.1	Wheat	golgi	93.77	93.5
Os06t0306600-01	Rice	cytosol	68.84	67.5
TraesCS2A01G143300.1	Wheat	plastid	63.74	65.22
TraesCS2A01G143500.1	Wheat	cytosol	65.16	64.25
TraesCS2A01G143600.1	Wheat	cytosol	52.97	55.65
TraesCS2A01G143000.1	Wheat	cytosol	52.41	54.73
TraesCS2A01G143100.1	Wheat	cytosol	53.54	54.15
TraesCS7A01G154600.1	Wheat	nucleus	52.69	52.1
TraesCS4A01G225700.1	Wheat	mitochondrion	46.18	47.8
HORVU2Hr1G025380.7	Barley	cytosol	48.73	46.74
TraesCS4A01G224900.1	Wheat	cytosol	45.04	46.36
TraesCS4A01G225000.1	Wheat	cytosol	37.11	43.52
TraesCS2A01G173400.1	Wheat	plastid	42.78	43.27
TraesCS1A01G255100.1	Wheat	cytosol	35.41	35.21
TraesCS3A01G307200.1	Wheat	cytosol	31.44	33.95
TraesCS3A01G307000.1	Wheat	cytosol	31.16	33.64
TraesCS3A01G131200.1	Wheat	cytosol	31.73	33.04
TraesCS3A01G307100.1	Wheat	cytosol	31.16	32.93
TraesCS6A01G389700.1	Wheat	plastid	32.29	32.39
TraesCS5A01G427400.1	Wheat	cytosol	30.03	31.74
TraesCS6A01G313200.1	Wheat	cytosol	30.88	31.23
TraesCS4A01G085300.1	Wheat	mitochondrion	31.73	31.11
TraesCS7A01G271100.1	Wheat	cytosol, plastid	30.88	30.88
TraesCS4A01G023600.1	Wheat	cytosol, plastid	28.61	30.06
TraesCS7A01G422300.1	Wheat	cytosol	30.88	29.7
TraesCS4A01G081600.1	Wheat	peroxisome	25.78	27.33
TraesCS1A01G257000.1	Wheat	cytosol	26.06	25.99
TraesCS1A01G257500.1	Wheat	cytosol, plastid	25.78	25.56
TraesCS5A01G070900.1	Wheat	cytosol, peroxisome, plasma membrane	24.65	24.44
TraesCS2A01G247100.1	Wheat	cytosol	20.68	24.25
TraesCS7A01G463000.1	Wheat	mitochondrion, plastid	26.06	22.55

Protein Annotations

EnsemblPlants:TraesCS2A01G143200.1	EnsemblPlantsGene:TraesCS2A01G143200	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS
PANTHER:PTHR23024	PANTHER:PTHR23024:SF216	PFAM:PF07859	ScanProsite:PS01173	SEG:seg	SUPFAM:SSF53474
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:88280830..88281891

Molecular Weight (calculated)

38034.1 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.068

Length

353 amino acids

Sequence
(BLAST)

001: MASDVARREL RARVVAMPWA VRLQLRALEA AVDATQRRDG TVNRFLFSLL VDRQAPANPA RADAGGVRSV DVTVDASTGV RARVYFTAGA GAEADASPRP
101: VIVYFHGGGF TVFSAATRPY DALCRTMCRE TGAVVVSVTY RLAPEHRYPA AYDDGEAALR YLATTGLPAE VPVRVDLSRC FLAGDSAGAN IAHHVAQRWT
201: AAPATTPPAV HLAGLLLLSS YFGGEDRTES EQALEGVAPI VNLRRSDFWW KAYLPEGADR NHPAAHVTGE AGPEPELPDA FPRAMVVVGG LDPLQDWGRR
301: YAGMLRRKGK EVRVVEFTEA VHAFYFFPAL PETGKLVAEI SAFVESTAPS STA

Best Arabidopsis Sequence Match ( AT3G05120.1 )
(BLAST)

001: MAASDEVNLI ESRTVVPLNT WVLISNFKVA YNILRRPDGT FNRHLAEYLD RKVTANANPV DGVFSFDVLI DRRINLLSRV YRPAYADQEQ PPSILDLEKP
101: VDGDIVPVIL FFHGGSFAHS SANSAIYDTL CRRLVGLCKC VVVSVNYRRA PENPYPCAYD DGWIALNWVN SRSWLKSKKD SKVHIFLAGD SSGGNIAHNV
201: ALRAGESGID VLGNILLNPM FGGNERTESE KSLDGKYFVT VRDRDWYWKA FLPEGEDREH PACNPFSPRG KSLEGVSFPK SLVVVAGLDL IRDWQLAYAE
301: GLKKAGQEVK LMHLEKATVG FYLLPNNNHF HNVMDEISAF VNAEC

Arabidopsis Description

GID1AGID1A [Source:UniProtKB/TrEMBL;Acc:A0A178VM30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.