Factsheet for TraesCS4D01G017700.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G294100.1	Wheat	cytosol	98.28	94.9
TraesCS4B01G020000.1	Wheat	plastid	98.39	94.59
HORVU4Hr1G003100.1	Barley	plastid	97.93	93.63
Os08t0398700-01	Rice	plasma membrane	87.37	86.97
KXG25106	Sorghum	plasma membrane	86.68	86.19
Zm00001d032282_P012	Maize	plasma membrane	85.3	84.82
TraesCS5D01G196600.1	Wheat	plasma membrane	71.64	67.61
TraesCS5D01G196500.1	Wheat	plasma membrane	70.84	67.14
TraesCS6D01G171800.1	Wheat	golgi, unclear	62.0	61.57
TraesCS5D01G083200.1	Wheat	plasma membrane	51.21	57.55
TraesCS1D01G442200.1	Wheat	plasma membrane	50.52	57.14
KRH61543	Soybean	cytosol	4.48	44.32
VIT_04s0008g05980.t01	Wine grape	cytosol	7.46	40.37
TraesCS5D01G487100.1	Wheat	cytosol	10.79	15.33

Protein Annotations

Gene3D:1.10.390.60	Gene3D:1.25.50.20	MapMan:19.4.5.6.5	Gene3D:2.60.40.1730	Gene3D:2.60.40.1910	InterPro:ERAP1-like_C_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008237	GO:GO:0008270	GO:GO:0016787	GO:GO:0019538	InterPro:M1_APN-typ	PFAM:PF01433
PFAM:PF11838	PRINTS:PR00756	PANTHER:PTHR11533	PANTHER:PTHR11533:SF183	InterPro:Peptidase_M1	InterPro:Peptidase_M1_N
SUPFAM:SSF55486	SUPFAM:SSF63737	EnsemblPlantsGene:TraesCS4D01G017700	EnsemblPlants:TraesCS4D01G017700.2	TIGR:cd09601	SEG:seg

Description

No Description!

Coordinates

chr4D:+:7826909..7834590

Molecular Weight (calculated)

97862.6 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.150

Length

871 amino acids

Sequence
(BLAST)

001: MAESPEQFRG QSRLPRFAEP LRYDLVLRPD LAACTFSGSA SAAVAVSSPT RFLVLNAAEL AVDRSSIRFQ DWAPTEVAQF EEDEILVLGF DRELPLGEGV
101: LAMDFTGTLN DQMRGFYRSK YEYNGEARNM AVTQFEAADA RRCFPCWDEP AFKAKFKITL EVPAELVALS NMPVVKETVC GPLKTVYYEE SPLMSTYLVA
201: IVVGLFDYIE SSTLEGTKVR VYTQVGKTSQ GKFALDVGVK SLDLFKDYFA TPYPLPKLDM IAIPDFAAGA MENYGLVTYR ESALLYDEQL SSASNKQQVA
301: ITVAHELAHQ WFGNLVTMEW WTHLWLNEGF ASWVSYLAVE SIFPEWNNWT QFLDETTSGL RLDALAESHP IEVDVNHASE IDAIFDSISY DKGASVIRML
401: QSYLGAERFQ KALASYIKKY AYSNAKTEDL WAVLEEETGE PVKDLMTTWT KQQGYPVIYA KLNGQDLELE QAQFLSDGSS GPGMWIVPMT ACCGSYDLNK
501: KFLLKGKTDT MHIKDFAASQ SGQNFWIKLN IDQTGFYRVK YDDELAAGLE NAIKAKKLSL MDMIGIVEDS YALSVACKQT LTSLLRLLNA YRHESDYTVL
601: SHVTSVCLSV NKISTDANPD LSSDIKQLLI KLLLLAAKRV GWDPKDGESH LDVMLRSLLL IALVKLGHDE TIKEGIRRFH IFLEDRKTPL LPPDNRKAAY
701: LAVMRTVSTS NRTGYDVLLK IYKETSEAQE KSRILGSLSS CPDKDIVVEA LNLMLTDEVR NQDAFYVLGG ISLEGREAAW AWLKDNWDHV VKTWPSSSLI
801: SDFVNSTVSP FTSEEKAAEV SEFFATRVKP SFERALKQSL ERVRISARWI DSIKSEPSLA QTVQQLLLQE F

Best Arabidopsis Sequence Match ( AT4G33090.1 )
(BLAST)

001: MDQFKGEPRL PKFAVPKRYD LRLNPDLIAC TFTGTVAIDL DIVADTRFIV LNAADLSVND ASVSFTPPSS SKALAAPKVV LFEEDEILVL EFGEILPHGV
101: GVLKLGFNGV LNDKMKGFYR STYEHNGEKK NMAVTQFEPA DARRCFPCWD EPACKATFKI TLEVPTDLVA LSNMPIMEEK VNGNLKIVSY QESPIMSTYL
201: VAIVVGLFDY VEDHTSDGIK VRVYCQVGKA DQGKFALHVG AKTLDLFKEY FAVPYPLPKM DMIAIPDFAA GAMENYGLVT YRETALLYDE QHSAASNKQR
301: VATVVAHELA HQWFGNLVTM EWWTHLWLNE GFATWVSYLA TDSLFPEWKI WTQFLDESTE GLRLDGLEES HPIEVEVNHA AEIDEIFDAI SYRKGASVIR
401: MLQSYLGAEV FQKSLAAYIK NHAYSNAKTE DLWAALEAGS GEPVNKLMSS WTKQKGYPVV SAKIKDGKLE LEQSRFLSSG SPGEGQWIVP VTLCCGSYEK
501: RKNFLLESKS GAYDLKELLG CSIADGSDKI NGTCSWIKIN VDQAGFYRVK YDDSLAAGLR NATESQSLTS IDRYGILDDS FALTMARQQS LASLLTLCSA
601: YKKELDYTVL SNLIAISYKV VKIGADANQE LMSGIKHFFI GVFQFAAGKL GWDPKQGESH LDAMLRGEVL TALAVFGHDE TLKEAVRRFD AFLADRNTPL
701: LPPDIRRAAY VAVMQRANKS DKSGYESLLR VYRETDLSQE KTRILGSLAS CPDPTIVQDV LNFVLSDEVR NQDALYGLSG VSWEGREVAW KWLQEKWEYI
801: GNTWGSGFLI TRFISAVVSP FASFEKAKEV EEFFATRSKP SMARTLKQSI ERVHINANWV ESIKKEDNLT QLVAQLSSN

Arabidopsis Description

APM1Aminopeptidase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR6]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.