Factsheet for TraesCS4D01G079100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G079200.1	Wheat	plasma membrane	4.74	2.95
TraesCS4D01G257900.1	Wheat	plasma membrane	2.91	1.86
TraesCS5D01G080700.1	Wheat	plasma membrane	2.75	1.76
TraesCS7D01G252900.4	Wheat	cytosol	1.68	1.02
TraesCS3D01G470100.1	Wheat	plasma membrane	1.53	0.96
TraesCS5D01G284100.3	Wheat	plasma membrane	1.53	0.93
TraesCS2D01G430700.1	Wheat	plasma membrane	1.53	0.93
TraesCS5D01G142900.2	Wheat	plasma membrane	1.38	0.87
TraesCS6D01G142400.1	Wheat	cytosol, nucleus, plasma membrane	1.38	0.82
TraesCS1D01G312500.1	Wheat	plasma membrane	1.07	0.67
KRH14123	Soybean	plasma membrane	0.92	0.58
VIT_00s0463g00030.t01	Wine grape	plasma membrane	0.76	0.49
TraesCS1D01G335400.1	Wheat	plastid	0.46	0.29
TraesCS4D01G202200.2	Wheat	plasma membrane	0.46	0.28
Solyc07g065300.1.1	Tomato	plasma membrane	0.31	0.21
TraesCS1D01G335500.1	Wheat	plastid	0.31	0.2
TraesCS1D01G047900.1	Wheat	plasma membrane	0.31	0.19
TraesCS1D01G066500.1	Wheat	mitochondrion	0.15	0.12
TraesCS4D01G060900.1	Wheat	plasma membrane	0.15	0.1
VIT_00s0691g00010.t01	Wine grape	plasma membrane	0.0	0.0

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	InterPro:IPR001126	InterPro:IPR036775	HAMAP:MF_01113	PFAM:PF00817
PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	SUPFAM:SSF100879
SUPFAM:SSF56672	EnsemblPlantsGene:TraesCS4D01G079100	EnsemblPlants:TraesCS4D01G079100.1	InterPro:UmuC	TIGR:cd03586	SEG:seg

Description

No Description!

Coordinates

chr4D:+:53231580..53237380

Molecular Weight (calculated)

72273.2 Da

IEP (calculated)

6.300

GRAVY (calculated)

-0.490

Length

654 amino acids

Sequence
(BLAST)

001: MSSAAGTPSD CGGHRPWQSY HTAYTNAKAG MEGVDREKVQ KVIYEMSKGS KYFENEQKKE AITKLKIEHL RAQCAKLTDN DISHFQKVAE KKILELEASR
101: DLSKIWLHTD MDAFYAAVET LENPSLKGKP LAVGSMSMIA TASYEARKFG VRAAMPGFIG CKLCPDLVFV RPNFGRYTHY SGLARKVFQR YDPNFFATSL
201: DEAYLDITEV CSERGITGEE VASELRDAVH QETGLTCSAG VAPNRMIAKV CSDINKPNGQ FILPNDRDAV TTFVSTLPIR KIGGIGKVTE QMLHQVLGIS
301: TCQEMLQKGA FLCALFSEGS TDFFLSVGLG LGGTETPEHR LRKSMSCERT FSATNDSHLL FEKLDNLAEN LADDMQKECL KGRTLTLKLK TAAFEVRTRA
401: ATAQNYISSK EDILIYAKKL LKAEMPLSLR LMGLRMSHFS GEKDDSTSPT QKTLDRFFHS SDINSNTNGT NGASCIDVSG GHNDCNDATT KDECSIHDAE
501: KDVSIDQQPS HEENSSVAEG ASSVNYDNEA ASSSWKVTQT EKFDELGDLT SSKACASSSK PGQHFWVDGY ICSLCGFELP PCFEEERQEH SDFHLAEMLQ
601: QEEAVDSTAR LSKERLAERP CSTSTPTPKK KLKSSKEGKH IPIDSFFLKC NKNS

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.