Factsheet for TraesCS4D01G246600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13750.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT1G13750.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT1G13750.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G247300.1	Wheat	extracellular	98.52	97.24
TraesCS4A01G057700.2	Wheat	extracellular	98.85	93.62
HORVU4Hr1G067950.8	Barley	extracellular, plasma membrane	96.88	89.12
Os03t0214000-01	Rice	extracellular, plasma membrane	84.24	83.41
Zm00001d035906_P001	Maize	cytosol	16.91	83.06
EER95277	Sorghum	extracellular	82.43	81.23
Zm00001d048090_P002	Maize	plasma membrane	83.25	80.09
GSMUA_Achr3P15950_001	Banana	vacuole	71.43	70.96
KRH45750	Soybean	vacuole	68.47	67.69
KRG99244	Soybean	extracellular	67.82	67.05
PGSC0003DMT400072925	Potato	extracellular	65.35	65.14
CDY16105	Canola	extracellular	65.68	65.04
PGSC0003DMT400023440	Potato	extracellular	65.19	64.98
Solyc05g012260.2.1	Tomato	nucleus	64.53	64.85
CDY33806	Canola	extracellular, golgi, vacuole	66.01	64.73
Bra026890.1-P	Field mustard	extracellular, golgi	66.01	64.73
TraesCS5D01G293500.1	Wheat	cytosol	42.69	64.52
AT1G13750.1	Thale cress	extracellular, plasma membrane, vacuole	64.86	64.44
TraesCS5D01G090100.3	Wheat	plastid	69.46	63.42
KRH70903	Soybean	endoplasmic reticulum, extracellular, golgi, plastid	65.85	62.56
VIT_01s0011g00470.t01	Wine grape	cytosol, extracellular, plasma membrane	67.49	61.16
CDX98126	Canola	extracellular, plasma membrane	62.07	61.07
CDY36408	Canola	extracellular, plasma membrane	53.2	60.9
Bra019705.1-P	Field mustard	extracellular, plasma membrane	61.9	60.81
TraesCS4D01G343000.1	Wheat	plastid	61.58	60.78
TraesCS1D01G401800.1	Wheat	extracellular, golgi, vacuole	61.74	60.55
TraesCS7D01G260900.1	Wheat	extracellular, plasma membrane, vacuole	60.59	60.0
TraesCS5D01G293700.1	Wheat	extracellular, golgi	56.65	58.67
TraesCS7D01G095900.1	Wheat	extracellular, plasma membrane, vacuole	59.77	58.62
TraesCS5D01G293600.1	Wheat	cytosol	29.06	54.97
TraesCS5D01G293400.1	Wheat	extracellular	54.19	52.72
TraesCS3D01G323100.1	Wheat	extracellular, plasma membrane, vacuole	33.5	32.48
TraesCS5D01G449800.1	Wheat	extracellular	22.33	28.51
TraesCS5D01G136600.1	Wheat	extracellular	19.05	26.61
TraesCS2D01G544400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	27.42	25.93
TraesCS5D01G136500.1	Wheat	extracellular	18.72	25.73
TraesCS6D01G339100.1	Wheat	extracellular, golgi	19.38	25.49
TraesCS4D01G332800.1	Wheat	extracellular	18.55	24.84
TraesCS3D01G312000.1	Wheat	extracellular, plasma membrane, vacuole	18.88	24.68
TraesCS4D01G333500.1	Wheat	extracellular	18.39	24.62
TraesCS2D01G262000.1	Wheat	extracellular, plasma membrane, vacuole	26.11	24.39
TraesCS2D01G291800.1	Wheat	endoplasmic reticulum	17.73	24.32
TraesCS5D01G474000.1	Wheat	extracellular	18.39	24.3
TraesCS6D01G103800.2	Wheat	extracellular	18.23	24.03
TraesCS7D01G507900.1	Wheat	extracellular	18.55	23.69
TraesCS7D01G012100.1	Wheat	cytosol	5.58	22.22
TraesCS5D01G136700.1	Wheat	mitochondrion	18.06	22.0
TraesCS2D01G506800.2	Wheat	plastid	17.57	19.85
TraesCS5D01G186700.1	Wheat	extracellular, golgi, mitochondrion, plastid, vacuole	19.21	19.44
TraesCS5D01G335100.2	Wheat	extracellular	17.41	19.31
TraesCS3D01G177900.1	Wheat	cytosol	18.06	19.2

Protein Annotations

Gene3D:3.60.21.10	MapMan:35.1	InterPro:Calcineurin-like_PHP_ApaH	GO:GO:0003674	GO:GO:0003824	GO:GO:0003993
GO:GO:0005488	GO:GO:0016787	GO:GO:0046872	InterPro:IPR008963	InterPro:IPR029052	InterPro:Metallo-depent_PP-like
PFAM:PF00149	PFAM:PF14008	PANTHER:PTHR22953	PANTHER:PTHR22953:SF54	InterPro:Purple_acid_PPase_C_dom	InterPro:Purple_acid_Pase-like_N
SUPFAM:SSF49363	SUPFAM:SSF56300	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4D01G246600	EnsemblPlants:TraesCS4D01G246600.1	TIGR:cd00839
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:415290163..415294774

Molecular Weight (calculated)

67662.6 Da

IEP (calculated)

6.278

GRAVY (calculated)

-0.272

Length

609 amino acids

Sequence
(BLAST)

001: MVAALVHLLV AFSAAVLAAA GGEQPLSKIG VHRATLAIHP GASVDVSPLL LGLQGQDQEW VTIGFNNPRP SKDDWIGVFS PANFSDSICP SENQWVEAPL
101: LCTAPIKFQY ANYTTADYAK TGKGSLRLQI INQRSDISFA LFSGGLSNPK LITRSNSITF ANPKAPVYPR LAQGKSWDEM TVTWTSGYST KEATPFVEWG
201: IQGQIQILSP AGTLTFSRDT MCGPPARTVG WRDPGFIHTS FFKDLWPNLK YTYRIGHRLF NGQIVWGRQN SFKAPPYPGE DSLQRVVIFG DLGKAEIDGS
301: NEYNDFERGS INTTYQLVKD LKNIDMVMHI GDICYASGYL SQWDQFTAQV EPIASTVPYM VASGNHERDW PGSGSFYGTL DSGGECGVPA QNMFYVPAEN
401: REQFWYLTDY GMFRFCVANT ELDWRPGTEQ YKFIEHCLSS VDRQKQPWLI FLAHRVLGYS SATFYGAEGT TEEPMGRESL QLLWQKYRVD IAMYGHVHGY
501: ERTCPVYENV CVAKGSDRYS GAFTATTHVV VGGGGASLAE YTAERARWSH AQDLDYGFAK LTAFNHTTLL MEYKRSRDGS VRDSFTVSRD YRDVLACGVD
601: NCAATTMAS

Best Arabidopsis Sequence Match ( AT1G13750.1 )
(BLAST)

001: MRESLVAILV TVISVLGAIH QVKSHEDQPL SGIAVHKITF GLNEKAYVKA SPTVLGSNGQ HSELVLVQYS SPKPSDDDWI GVFSPADFNA STCPGDNKMV
101: QPPRLCSAPV KFQYANFSNP RYTNTGTGSL KLQLINQRSD FSFALFSGGL LNPKLVAISN KVAFENPNAP VYPRLALGKE WDEMTVTWTS GYGLNLAEPV
201: VEWGVKGGER KLSPAGTLTF ARNSMCGAPA RTVGWRDPGY IHTAFLKELW PNSKYTYRVG HRLSNGALIW SKEYQFKSSP FPGQNSVQQV VIFGDMGKAE
301: VDGSSEYNDF QRASLNTTKQ LIKDLKKTDA VFHIGDICYA NGYLSQWDQF IAQIEPIAST VPYMIASGNH ERVWPNSGSF YEGLDSGGEC GVPAETMFYV
401: PAQNRAKVWY SSDYGMFRFC VADTEHDWRE GTEQYNFIEH CLASVDRQKQ PWLIFLAHRV LGYSSTYFYA EEGSFAEPMG RESLQKLWQK YKVDIAIYGH
501: AHNYERTCPV YQSVCTSHEK SNYKAPLNGT IHIVAGGGGA GLAEFSDLQP NWSLFRDYDY GFLKLTAIDH SNLLFEYKKS SDGRVHDSFT ISKDYRDILA
601: CAVDSCPATT LAS

Arabidopsis Description

PAP1Probable inactive purple acid phosphatase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMX4]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.