Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G511700.1 | Wheat | endoplasmic reticulum, golgi | 93.58 | 93.58 |
| HORVU4Hr1G084180.1 | Barley | cytosol | 37.17 | 91.3 |
| HORVU4Hr1G084190.1 | Barley | endoplasmic reticulum, extracellular | 24.11 | 90.08 |
| TraesCS4D01G338600.1 | Wheat | endoplasmic reticulum, golgi | 82.08 | 81.36 |
| TraesCS7D01G455000.1 | Wheat | endoplasmic reticulum, golgi | 56.19 | 57.21 |
| TraesCS7D01G455300.2 | Wheat | endoplasmic reticulum, plasma membrane | 30.97 | 53.64 |
| Os05t0591400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion | 49.12 | 50.8 |
| TraesCS5D01G070100.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 35.18 | 35.81 |
| TraesCS7D01G422600.1 | Wheat | endoplasmic reticulum | 35.4 | 24.62 |
| TraesCS2D01G108000.1 | Wheat | endoplasmic reticulum | 30.09 | 21.32 |
| TraesCS4D01G243000.1 | Wheat | cytosol | 19.69 | 15.32 |
| TraesCS7D01G445600.1 | Wheat | cytosol | 21.02 | 12.98 |
| TraesCS1D01G121000.1 | Wheat | cytosol | 19.25 | 10.42 |
| TraesCS1D01G121200.3 | Wheat | cytosol, golgi, unclear | 18.81 | 10.1 |
| TraesCS6D01G257000.1 | Wheat | endoplasmic reticulum | 19.47 | 9.99 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G338300.1 | EnsemblPlantsGene:TraesCS4D01G338300 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Hsp_70_fam | PANTHER:PTHR19375 |
| PANTHER:PTHR19375:SF201 | PFAM:PF00012 | PRINTS:PR00301 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF53067 |
| TIGR:cd10170 | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:496137767..496139415
Molecular Weight (calculated)
49511.6 Da
IEP (calculated)
6.989
GRAVY (calculated)
-0.152
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAARPVLYH LGVLLFLAMA ASGAAAFGLP RGVSPAYCAN EFLQYQGISQ NEKAAIHLGN TKSCIAGYGG RLDPYTAYQL CIPSWVAFTH NGTLVGEAAI
101: NHAAVSPGTA VSGFKRLLGI RMYNEMVKRE AELVPYQFTE ELGRCGIQME TEEGHVMNFL PERVAGILIA ELKKMAEARL GREIESALVT VPGHLNGAQR
201: SSFRREAARL HGGFGVAKVV DEQVAAAAAY RLYEKRGDGK VVLVFHLGGR TSHATKFRFK DGTGRLLEER HDAYLGGDDF TDRVVDYFVE LIKEKHHRDI
301: RGDEGALKKL RAHCERTKKL LNDREGVLMN IGPVLGQGAD IYEELTRAKF EELNRDLMER ALEIVDTVVM GGAPTSQTQS CKDAIDEVIL VGGSVRIPMV
401: GQLLEDYFNG RGLIRDEDAV IRGAALLSRP ESARYVDECY NGGVSGPLWL AK
101: NHAAVSPGTA VSGFKRLLGI RMYNEMVKRE AELVPYQFTE ELGRCGIQME TEEGHVMNFL PERVAGILIA ELKKMAEARL GREIESALVT VPGHLNGAQR
201: SSFRREAARL HGGFGVAKVV DEQVAAAAAY RLYEKRGDGK VVLVFHLGGR TSHATKFRFK DGTGRLLEER HDAYLGGDDF TDRVVDYFVE LIKEKHHRDI
301: RGDEGALKKL RAHCERTKKL LNDREGVLMN IGPVLGQGAD IYEELTRAKF EELNRDLMER ALEIVDTVVM GGAPTSQTQS CKDAIDEVIL VGGSVRIPMV
401: GQLLEDYFNG RGLIRDEDAV IRGAALLSRP ESARYVDECY NGGVSGPLWL AK
001: MIFIKENTAK MTRNKAIACL VFLTALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA AKNQAAKNPE
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
Arabidopsis Description
MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.