Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G065900.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 90.99 | 89.98 |
| HORVU5Hr1G014490.1 | Barley | cytosol | 83.56 | 86.48 |
| EES16657 | Sorghum | endoplasmic reticulum, golgi | 47.75 | 48.4 |
| TraesCS7D01G455000.1 | Wheat | endoplasmic reticulum, golgi | 36.49 | 36.49 |
| TraesCS4D01G338300.1 | Wheat | endoplasmic reticulum | 35.81 | 35.18 |
| TraesCS4D01G338600.1 | Wheat | endoplasmic reticulum, golgi | 35.81 | 34.87 |
| TraesCS7D01G455300.2 | Wheat | endoplasmic reticulum, plasma membrane | 19.59 | 33.33 |
| TraesCS7D01G422600.1 | Wheat | endoplasmic reticulum | 41.89 | 28.62 |
| TraesCS2D01G108000.1 | Wheat | endoplasmic reticulum | 33.56 | 23.35 |
| TraesCS4D01G243000.1 | Wheat | cytosol | 22.3 | 17.04 |
| TraesCS7D01G445600.1 | Wheat | cytosol | 23.65 | 14.34 |
| TraesCS1D01G121000.1 | Wheat | cytosol | 25.0 | 13.29 |
| TraesCS1D01G121200.3 | Wheat | cytosol, golgi, unclear | 24.77 | 13.06 |
| TraesCS6D01G257000.1 | Wheat | endoplasmic reticulum | 21.62 | 10.9 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G070100.1 | EnsemblPlantsGene:TraesCS5D01G070100 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Heat_shock_70_CS | InterPro:Hsp_70_fam |
| ncoils:Coil | PANTHER:PTHR19375 | PANTHER:PTHR19375:SF201 | PFAM:PF00012 | PFscan:PS51257 | PRINTS:PR00301 |
| ScanProsite:PS01036 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF53067 | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chr5D:-:67959607..67960941
Molecular Weight (calculated)
48311.1 Da
IEP (calculated)
5.457
GRAVY (calculated)
-0.074
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMVGVRVAA ILLVSIAACF LLLGHAGAVN GNQAPHSPSP VIAIDLGNTN SCVAGYSHGH GQVETMFQLC IPTWVAFPGD GSVLVGEDAK NHAAPNPIFG
101: FKRLLGKSRD LEREEEEVRE LMVRVPYKVV GRERPLVQVQ MADGAVKNLG ADEITAMVLA KLRESAEAYL GRAIQEAIVT VPQQYNDPSR YSMLRAAELA
201: GLRVTRMIDE PTAAAVAHGL HRKLRDEGNV LVLHVGGGTS DASVMWYVDG VFEFMGADED PFFGGQDFDQ RIVDHFVELI RKKHGKDLSN DKGVLGRLRT
301: ACEQAKKALS SQDVAELSIK SLVDGVDFSG SLTRAEFEEL NHDLFLKAMA LVESAMRQAG LDKNKELLDE IVLVGGSTMI PGIRRLVTDY FDGRELKNIN
401: ASVMPDQTVT LGAALLSHPM ANGYPCMGGD RRQWGYSTDW CFTD
101: FKRLLGKSRD LEREEEEVRE LMVRVPYKVV GRERPLVQVQ MADGAVKNLG ADEITAMVLA KLRESAEAYL GRAIQEAIVT VPQQYNDPSR YSMLRAAELA
201: GLRVTRMIDE PTAAAVAHGL HRKLRDEGNV LVLHVGGGTS DASVMWYVDG VFEFMGADED PFFGGQDFDQ RIVDHFVELI RKKHGKDLSN DKGVLGRLRT
301: ACEQAKKALS SQDVAELSIK SLVDGVDFSG SLTRAEFEEL NHDLFLKAMA LVESAMRQAG LDKNKELLDE IVLVGGSTMI PGIRRLVTDY FDGRELKNIN
401: ASVMPDQTVT LGAALLSHPM ANGYPCMGGD RRQWGYSTDW CFTD
001: MIFIKENTAK MTRNKAIACL VFLTALMSSL AIEGEEQKLG TVIGIDLGTT YSCVGVYHNK HVEIIANDQG NRITPSWVAF TDTERLIGEA AKNQAAKNPE
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
101: RTIFDPKRLI GRKFDDPDVQ RDIKFLPYKV VNKDGKPYIQ VKVKGEEKLF SPEEISAMIL TKMKETAEAF LGKKIKDAVI TVPAYFNDAQ RQATKDAGAI
201: AGLNVVRIIN EPTGAAIAYG LDKKGGESNI LVYDLGGGTF DVSILTIDNG VFEVLSTSGD THLGGEDFDH RVMDYFIKLV KKKYNKDISK DHKALGKLRR
301: ECELAKRSLS NQHQVRVEIE SLFDGVDFSE PLTRARFEEL NMDLFKKTME PVKKALKDAG LKKSDIDEIV LVGGSTRIPK VQQMLKDFFD GKEPSKGTNP
401: DEAVAYGAAV QGGVLSGEGG EETQNILLLD VAPLSLGIET VGGVMTNIIP RNTVIPTKKS QVFTTYQDQQ TTVTINVYEG ERSMTKDNRE LGKFDLTGIL
501: PAPRGVPQIE VTFEVDANGI LQVKAEDKVA KTSQSITITN DKGRLTEEEI EEMIREAEEF AEEDKIMKEK IDARNKLETY VYNMKSTVAD KEKLAKKISD
601: EDKEKMEGVL KEALEWLEEN VNAEKEDYDE KLKEVELVCD PVIKSVYEKT EGENEDDDGD DHDEL
Arabidopsis Description
MED37BProbable mediator of RNA polymerase II transcription subunit 37b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1B3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.