Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 4
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G318400.1 | Wheat | plasma membrane | 88.18 | 74.08 |
| HORVU0Hr1G022090.3 | Barley | plasma membrane | 87.31 | 73.62 |
| TraesCS7A01G418500.1 | Wheat | plasma membrane | 85.78 | 72.06 |
| Os06t0701700-01 | Rice | plasma membrane | 65.65 | 56.6 |
| GSMUA_Achr7P16030_001 | Banana | extracellular, plasma membrane, vacuole | 26.91 | 46.95 |
| GSMUA_Achr6P30960_001 | Banana | plasma membrane | 48.58 | 44.58 |
| TraesCS7A01G418600.1 | Wheat | plasma membrane | 49.02 | 44.09 |
| TraesCS2A01G430600.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 36.32 | 28.52 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G418200.1 | EnsemblPlantsGene:TraesCS7A01G418200 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0008150 | GO:GO:0008324 | GO:GO:0055085 | InterPro:Cat_transpt | ncoils:Coil | PANTHER:PTHR31064 |
| PANTHER:PTHR31064:SF9 | PFAM:PF02386 | SEG:seg | TMHMM:TMhelix | MapMan:24.2.20 | : |
Description
No Description!
Coordinates
chr7A:+:609549041..609550805
Molecular Weight (calculated)
50337.1 Da
IEP (calculated)
8.316
GRAVY (calculated)
0.416
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFLSTSSLT VSGLSTITME DLSSSQIVVL TLFMLVGGEI FVSLLGLMLR VNHQDMQDLP NVKISSVPVE LEEIDSANNA AQSDESQLEE AAHAIPPKKC
101: TELKRSRTVK CLGYVVFGYF AVIHVLGFLL VFLYITHVPS ASAPLNKKGI NIVLFSLSVT VASCANAGLV PTNENMVIFS KNSGLLLLLS GQILAGNTLF
201: PLFLRLLVWF LERLIEMKEL WHMIKNPEEV HFANLLPRLP TAFLSSTVIG LVAAGVMMFC AVDCNSSVFD GLSSYQKTVN AFFMVVNVRH SGENSIDCSL
301: MSPAIVVLIF IVMMYLPSTT TLTPPNGDIK TTDENTKGKR GKRGSLVQKL AFSPLGFNAI FVVVACITER RRLRNDPLNF STLNMIFEVI SAYGNAGLST
401: GYSCSRLHQL HPEIICQDKP YSFSGWWSDK GKFVLILVML YGRLKAFAMA TGKYWKV
101: TELKRSRTVK CLGYVVFGYF AVIHVLGFLL VFLYITHVPS ASAPLNKKGI NIVLFSLSVT VASCANAGLV PTNENMVIFS KNSGLLLLLS GQILAGNTLF
201: PLFLRLLVWF LERLIEMKEL WHMIKNPEEV HFANLLPRLP TAFLSSTVIG LVAAGVMMFC AVDCNSSVFD GLSSYQKTVN AFFMVVNVRH SGENSIDCSL
301: MSPAIVVLIF IVMMYLPSTT TLTPPNGDIK TTDENTKGKR GKRGSLVQKL AFSPLGFNAI FVVVACITER RRLRNDPLNF STLNMIFEVI SAYGNAGLST
401: GYSCSRLHQL HPEIICQDKP YSFSGWWSDK GKFVLILVML YGRLKAFAMA TGKYWKV
001: MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS
101: NLYVSYFTKF VFPHNKIRHI LGSYNSDSSI EDRCDVETVT DYREGLIKID ERASKCLYSV VLSYHLVTNL VGSVLLLVYV NFVKTARDVL SSKEISPLTF
201: SVFTTVSTFA NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ
301: LLFFCAFEWT SESLEGMSSY EKLVGSLFQV VNSRHTGETI VDLSTLSPAI LVLFILMMYL PPYTLFMPLT EQKTIEKEGG DDDSENGKKV KKSGLIVSQL
401: SFLTICIFLI SITERQNLQR DPINFNVLNI TLEVISAYGN VGFTTGYSCE RRVDISDGGC KDASYGFAGR WSPMGKFVLI IVMFYGRFKQ FTAKSGRAWI
501: LYPSSS
Arabidopsis Description
HKT1Sodium transporter HKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.