Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G409000.1 | Wheat | mitochondrion | 96.6 | 96.6 |
| TraesCS7A01G501600.1 | Wheat | mitochondrion | 90.48 | 90.48 |
| Os06t0652550-00 | Rice | nucleus | 68.03 | 66.23 |
| Zm00001d046859_P001 | Maize | nucleus | 48.3 | 62.28 |
| OQU76797 | Sorghum | mitochondrion | 65.99 | 60.62 |
| Zm00001d046846_P001 | Maize | cytosol | 46.94 | 60.53 |
| HORVU7Hr1G112680.2 | Barley | plastid | 76.87 | 54.85 |
| GSMUA_Achr1P10200_001 | Banana | nucleus | 57.14 | 51.53 |
| HORVU7Hr1G112810.5 | Barley | cytosol, plastid | 72.79 | 49.31 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 46.94 | 16.24 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 45.58 | 15.99 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G489000.1 | EnsemblPlantsGene:TraesCS7D01G489000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF7 | PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 |
| MapMan:19.2.2.1.5.3.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:598695834..598697369
Molecular Weight (calculated)
16369.7 Da
IEP (calculated)
8.493
GRAVY (calculated)
-0.472
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNAAPRGPA VEERLTQPRR LVRQLSDLDS DRLRRLIRSG DLAPCFDAAE EDGRAVECPI CFHFYPSLNR SKCCGKGICT ECFLQLMPSK ASKAVHCPFC
101: KTAAYAVEYR GARTLSEKKL QREEEQSVYE GATRIHSKNA GGHILLP
101: KTAAYAVEYR GARTLSEKKL QREEEQSVYE GATRIHSKNA GGHILLP
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSDNGNNS HYNAIEQDSN HYLQGAGISY TRSDMTDDSG GETSREVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSDNGNNS HYNAIEQDSN HYLQGAGISY TRSDMTDDSG GETSREVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.