Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 79.47 | 90.24 |
HORVU7Hr1G024070.1 | Barley | cytosol | 20.53 | 89.58 |
TraesCS7B01G010000.2 | Wheat | nucleus | 94.99 | 86.52 |
EER87870 | Sorghum | nucleus | 70.64 | 70.81 |
Zm00001d045309_P001 | Maize | nucleus | 68.74 | 68.74 |
Zm00001d036228_P001 | Maize | cytosol | 39.62 | 66.14 |
Os06t0154900-01 | Rice | nucleus | 41.53 | 65.91 |
HORVU4Hr1G034450.1 | Barley | cytosol | 26.97 | 57.95 |
CDY64724 | Canola | cytosol | 27.45 | 51.8 |
GSMUA_Achr10P... | Banana | nucleus | 48.21 | 51.79 |
GSMUA_AchrUn_... | Banana | nucleus | 46.78 | 47.0 |
TraesCS6D01G176900.1 | Wheat | cytosol | 47.49 | 46.82 |
VIT_19s0093g00620.t01 | Wine grape | nucleus | 43.91 | 46.82 |
GSMUA_Achr2P20090_001 | Banana | nucleus | 47.02 | 46.68 |
GSMUA_Achr3P17550_001 | Banana | nucleus | 45.82 | 46.38 |
TraesCS7D01G489000.1 | Wheat | cytosol | 15.99 | 45.58 |
Solyc07g056630.2.1 | Tomato | nucleus | 45.58 | 45.26 |
Bra025999.1-P | Field mustard | nucleus | 35.56 | 45.15 |
CDY65128 | Canola | nucleus | 35.32 | 44.71 |
CDY48470 | Canola | nucleus | 34.61 | 44.07 |
KRH13587 | Soybean | nucleus | 44.87 | 43.93 |
AT1G17145.1 | Thale cress | nucleus | 35.08 | 43.88 |
KRH21787 | Soybean | nucleus | 44.87 | 43.62 |
CDY26864 | Canola | nucleus | 38.66 | 43.43 |
CDY26863 | Canola | nucleus | 38.66 | 43.43 |
CDX79263 | Canola | cytosol | 13.84 | 43.28 |
Bra008360.1-P | Field mustard | nucleus | 38.66 | 43.2 |
CDX88446 | Canola | nucleus | 38.9 | 40.95 |
CDY52445 | Canola | nucleus | 39.14 | 40.29 |
Bra035036.1-P | Field mustard | nucleus | 39.14 | 40.29 |
AT1G78420.1 | Thale cress | nucleus | 38.19 | 39.9 |
CDX68014 | Canola | cytosol | 10.98 | 37.1 |
Protein Annotations
EnsemblPlants:TraesCS7D01G107500.1 | EnsemblPlantsGene:TraesCS7D01G107500 | ncoils:Coil | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | SEG:seg |
MapMan:19.2.2.1.5.3.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:64683849..64688590
Molecular Weight (calculated)
44846.6 Da
IEP (calculated)
4.695
GRAVY (calculated)
-0.435
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRVGGRRR RPPVDERYTA PQGLYPHPDI DLKKLRRLIL EAKLAPCHPG ADDPRPDLDE CPICFLFYPS LNRSKCCAKG ICTECFLQMK SPTSCRPTQC
101: PYCKMLNYAV EYRGVKTKEE KGVEQIEEQR VIEAQIRMRH QELQDDAERL KNKQVAASTD EVAIARVEPC DTGGTSTPAA SAAQGNDAVS GQVQHSELLL
201: KNAERLRQLR DNNFDMDLEE VMLMEAIWLS VQDQEALGNP GSIGAVPPTL PLRCYDASGA ASAEAAPPGG FACAVAALAE QQHMLGDPSS TATCQASRHD
301: ILSRSQRSFT EDLSIAGSSA SATRVEEPSN GRTPQARDGA DYSNNDGWSE AAEASTSCAG SDVTVEAGAA SVAAAASDVS SIGSGNVPDS FEEQMMLAMA
401: LSLVDARGVG GSPPGLAWR
101: PYCKMLNYAV EYRGVKTKEE KGVEQIEEQR VIEAQIRMRH QELQDDAERL KNKQVAASTD EVAIARVEPC DTGGTSTPAA SAAQGNDAVS GQVQHSELLL
201: KNAERLRQLR DNNFDMDLEE VMLMEAIWLS VQDQEALGNP GSIGAVPPTL PLRCYDASGA ASAEAAPPGG FACAVAALAE QQHMLGDPSS TATCQASRHD
301: ILSRSQRSFT EDLSIAGSSA SATRVEEPSN GRTPQARDGA DYSNNDGWSE AAEASTSCAG SDVTVEAGAA SVAAAASDVS SIGSGNVPDS FEEQMMLAMA
401: LSLVDARGVG GSPPGLAWR
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.