Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64724 | Canola | cytosol | 37.15 | 65.77 |
| CDX79263 | Canola | cytosol | 21.12 | 61.94 |
| KRH21787 | Soybean | nucleus | 67.18 | 61.25 |
| KRH13587 | Soybean | nucleus | 66.41 | 60.98 |
| CDY48470 | Canola | nucleus | 50.64 | 60.49 |
| Solyc07g056630.2.1 | Tomato | nucleus | 64.63 | 60.19 |
| AT1G17145.1 | Thale cress | nucleus | 50.64 | 59.4 |
| CDY65128 | Canola | nucleus | 49.87 | 59.21 |
| Bra025999.1-P | Field mustard | nucleus | 49.62 | 59.09 |
| CDY26864 | Canola | nucleus | 55.22 | 58.18 |
| CDY26863 | Canola | nucleus | 54.71 | 57.64 |
| Bra008360.1-P | Field mustard | nucleus | 54.96 | 57.6 |
| GSMUA_Achr10P... | Banana | nucleus | 57.0 | 57.44 |
| CDX88446 | Canola | nucleus | 55.98 | 55.28 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 13.49 | 55.21 |
| Bra035036.1-P | Field mustard | nucleus | 56.49 | 54.55 |
| AT1G78420.1 | Thale cress | nucleus | 55.47 | 54.36 |
| CDY52445 | Canola | nucleus | 56.23 | 54.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.94 | 50.84 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 52.67 | 49.05 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 51.65 | 49.03 |
| Os06t0154900-01 | Rice | nucleus | 32.57 | 48.48 |
| Zm00001d036228_P001 | Maize | cytosol | 30.03 | 47.01 |
| Zm00001d053448_P001 | Maize | nucleus | 50.64 | 46.17 |
| KXG29907 | Sorghum | cytosol | 50.38 | 46.15 |
| CDX68014 | Canola | cytosol | 14.5 | 45.97 |
| EER87870 | Sorghum | nucleus | 48.85 | 45.93 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 49.11 | 45.52 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 48.85 | 45.18 |
| Zm00001d016164_P003 | Maize | nucleus | 49.87 | 45.16 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 48.6 | 45.05 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 48.09 | 44.47 |
| Os02t0244100-01 | Rice | nucleus | 47.84 | 44.44 |
| Zm00001d045309_P001 | Maize | nucleus | 47.33 | 44.39 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 46.82 | 43.91 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 46.56 | 39.78 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 37.15 | 39.57 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 16.03 | 32.31 |
Protein Annotations
| ArrayExpress:VIT_19s0093g00620 | EMBL:FN596009 | EnsemblPlants:VIT_19s0093g00620.t01 | EnsemblPlantsGene:VIT_19s0093g00620 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0016874 | PANTHER:PTHR31315 |
| PANTHER:PTHR31315:SF2 | ProteinID:CCB57201 | ProteinID:CCB57201.1 | SUPFAM:SSF57850 | UniParc:UPI000210859A | UniProt:F6HR93 |
| MapMan:19.2.2.1.5.3.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr19:-:17850490..17876379
Molecular Weight (calculated)
43972.4 Da
IEP (calculated)
4.494
GRAVY (calculated)
-0.724
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKLGRRRQ VVEDKYTRPQ GLYQHKDVDH KKLRKLILDS KLAPCYPGDE EATNDFEECP ICFLFYPSLN RSRCCTKGIC TECFLQMKNP NSTRPTQCPY
101: CKTANYAVEY RGVKTKEEKG MEQIEEQRVI EAKIRMRQKE IQDEEERMQK RQEISSSSSI LAQGEVEYST TAVPSFRSPV EGDEIDSSQD PRAASMIIQT
201: LPPRQNRDEE FDLDLEDIMV MEAIWLSIQD NGRHRNPLYG DTTTAEQYVT EEHYVLPAMA PQVESSSSPS GGLACAIAAL AERQQMGGES STNYNGNMPA
301: FNMPPGSSRF SNRVEQYPEN YPPIETGTSY ASSDATDEAG GVAALPPTDE AEGSFQNVGG PIVPESFEEQ MMLAMAVSLA EARARTSTQG VWQ
101: CKTANYAVEY RGVKTKEEKG MEQIEEQRVI EAKIRMRQKE IQDEEERMQK RQEISSSSSI LAQGEVEYST TAVPSFRSPV EGDEIDSSQD PRAASMIIQT
201: LPPRQNRDEE FDLDLEDIMV MEAIWLSIQD NGRHRNPLYG DTTTAEQYVT EEHYVLPAMA PQVESSSSPS GGLACAIAAL AERQQMGGES STNYNGNMPA
301: FNMPPGSSRF SNRVEQYPEN YPPIETGTSY ASSDATDEAG GVAALPPTDE AEGSFQNVGG PIVPESFEEQ MMLAMAVSLA EARARTSTQG VWQ
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.