Factsheet for HORVU6Hr1G044080.12

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G176900.1	Wheat	cytosol	94.82	94.82
TraesCS6B01G215300.1	Wheat	nucleus	94.12	94.34
TraesCS6A01G189300.1	Wheat	nucleus	93.65	93.87
Os02t0244100-01	Rice	nucleus	85.41	85.82
KXG29907	Sorghum	cytosol	82.59	81.82
Zm00001d053448_P001	Maize	nucleus	81.18	80.05
Zm00001d016164_P003	Maize	nucleus	80.24	78.57
CDY64724	Canola	cytosol	31.06	59.46
GSMUA_Achr10P...	Banana	nucleus	50.82	55.38
GSMUA_Achr2P20090_001	Banana	nucleus	52.71	53.08
GSMUA_Achr3P17550_001	Banana	nucleus	51.29	52.66
HORVU7Hr1G024070.1	Barley	cytosol	11.76	52.08
GSMUA_AchrUn_...	Banana	nucleus	50.35	51.32
CDX79263	Canola	cytosol	15.29	48.51
VIT_19s0093g00620.t01	Wine grape	nucleus	44.47	48.09
CDY26864	Canola	nucleus	41.41	47.19
Solyc07g056630.2.1	Tomato	nucleus	46.59	46.92
Bra008360.1-P	Field mustard	nucleus	41.18	46.67
CDY26863	Canola	nucleus	40.71	46.38
AT1G17145.1	Thale cress	nucleus	36.47	46.27
CDX68014	Canola	cytosol	13.18	45.16
CDY48470	Canola	nucleus	34.82	44.98
Bra025999.1-P	Field mustard	nucleus	34.59	44.55
CDY65128	Canola	nucleus	34.59	44.41
KRH21787	Soybean	nucleus	44.71	44.08
KRH13587	Soybean	nucleus	44.24	43.93
AT1G78420.1	Thale cress	nucleus	41.41	43.89
CDX88446	Canola	nucleus	40.47	43.22
Bra035036.1-P	Field mustard	nucleus	40.94	42.75
CDY52445	Canola	nucleus	40.94	42.75
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	35.53	40.92
HORVU4Hr1G034450.1	Barley	cytosol	13.65	29.74
HORVU7Hr1G112680.2	Barley	plastid	13.65	28.16
HORVU7Hr1G112810.5	Barley	cytosol, plastid	13.88	27.19

Protein Annotations

EnsemblPlants:HORVU6Hr1G044080.12	EnsemblPlantsGene:HORVU6Hr1G044080	InterPro:IPR001841	InterPro:Znf_RING	PANTHER:PTHR31315	PANTHER:PTHR31315:SF2
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000B461766	UniProt:A0A287U2C2	MapMan:19.2.2.1.5.3.6

Description

No Description!

Coordinates

chrchr6H:-:251136199..251161055

Molecular Weight (calculated)

47600.1 Da

IEP (calculated)

5.509

GRAVY (calculated)

-0.621

Length

425 amino acids

Sequence
(BLAST)

001: MGNRIGGRRK AGVEERYTRP QGLYEHRDID QKKLRKLILE AKLAPCYPGA DDAAGADLEE CPICFLYYPS LNRSKCCSKG ICTECFLQMK PTHTARPTQC
101: PFCKTPNYAV EYRGVKTKEE RSIEQFEEQK VIEAQMRMRQ QALQDEEDKM RRKQSRCSSS RTIAPTTEVE YRDICSTSYS APPYRCTEQE TECCSSEPSC
201: SAQANMRSFH SRHTRDGNID MNIEDMMVME AIWRSIQQEQ GSIGNPACGS FMPFEQPTRE RQAFVAASPL EIPHPGGFSC AVAAMTEHQP SSMDFSYMTG
301: SSAFPVFDMF RRPCNIAGGS LRAVESSLDS WSGIAPSGTR REMVREEGEC SIDHWSEGAE AGTSYAGSDI MADAGTMPPL PFADNYSMAA SHFRPESIEE
401: QMMYSMAVSL AEAHGRTHTQ GLTWL

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.