Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64724 | Canola | cytosol | 34.83 | 66.22 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 60.19 | 64.63 |
| CDX79263 | Canola | cytosol | 19.91 | 62.69 |
| AT1G17145.1 | Thale cress | nucleus | 47.16 | 59.4 |
| KRH13587 | Soybean | nucleus | 59.95 | 59.11 |
| CDY26864 | Canola | nucleus | 51.9 | 58.71 |
| KRH21787 | Soybean | nucleus | 59.72 | 58.47 |
| CDY26863 | Canola | nucleus | 51.66 | 58.45 |
| Bra008360.1-P | Field mustard | nucleus | 51.9 | 58.4 |
| CDY65128 | Canola | nucleus | 45.73 | 58.31 |
| Bra025999.1-P | Field mustard | nucleus | 45.5 | 58.18 |
| CDY48470 | Canola | nucleus | 45.26 | 58.05 |
| GSMUA_Achr10P... | Banana | nucleus | 52.61 | 56.92 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 12.8 | 56.25 |
| CDY52445 | Canola | nucleus | 53.55 | 55.53 |
| AT1G78420.1 | Thale cress | nucleus | 52.37 | 55.11 |
| Bra035036.1-P | Field mustard | nucleus | 53.08 | 55.04 |
| CDX88446 | Canola | nucleus | 51.9 | 55.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.66 | 52.28 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 51.18 | 52.17 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 51.9 | 51.9 |
| Os06t0154900-01 | Rice | nucleus | 30.33 | 48.48 |
| Zm00001d036228_P001 | Maize | cytosol | 28.67 | 48.21 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 48.1 | 47.88 |
| Zm00001d053448_P001 | Maize | nucleus | 48.82 | 47.8 |
| KXG29907 | Sorghum | cytosol | 48.58 | 47.79 |
| CDX68014 | Canola | cytosol | 13.98 | 47.58 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 47.87 | 47.53 |
| EER87870 | Sorghum | nucleus | 46.92 | 47.37 |
| Os02t0244100-01 | Rice | nucleus | 47.39 | 47.28 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 47.39 | 47.17 |
| Zm00001d045309_P001 | Maize | nucleus | 46.68 | 47.02 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 46.92 | 46.59 |
| Zm00001d016164_P003 | Maize | nucleus | 47.87 | 46.54 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 45.26 | 45.58 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 36.73 | 42.01 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 45.5 | 41.74 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 16.59 | 35.9 |
Protein Annotations
| EnsemblPlants:Solyc07g056630.2.1 | EnsemblPlantsGene:Solyc07g056630.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| InterPro:IPR001841 | InterPro:Znf_RING | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI000276B269 | UniProt:K4CGJ5 | MapMan:19.2.2.1.5.3.6 | : | : |
Description
No Description!
Coordinates
chr7:+:64441746..64448942
Molecular Weight (calculated)
47064.5 Da
IEP (calculated)
4.417
GRAVY (calculated)
-0.760
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKLGRRKQ VVDDKYTRPQ GLYQHKDVDV KKLRKLILDS KLAPCYPGDD DCPNANLEEC PICFLYYPSL NRSRCCMKGI CTECFLQMKT PNSTRPTQCP
101: FCKTSNYAVE YRGVKTKEEK GIEQIEEQRV IEAKIRMRQQ ELQDDEEKMH KRRELSTSSS IAGPSEIEYC STAAPSFASA VEGGEVVTSQ ETCTAPTTRQ
201: PQRTRQNRED DFDLDLEDIM VMEAIWLSIQ ENGRNRSMDY SDVGPSEQYT EEDHRCVPAV NPTASGSSSS PSGGLACAIA ALAERQQMSG ESSSYSRNMS
301: SSYNEHPSCD RFSNGEELEN DDYPHAEGTM HVSPESHLEI PREDGEWADH GSMVAEVGTS YAVSDEMEDD ASFPLQGEMV SDLQPNTSSI VPENFEEQMM
401: LAMAVSLAEA SARSSPPGVA WH
101: FCKTSNYAVE YRGVKTKEEK GIEQIEEQRV IEAKIRMRQQ ELQDDEEKMH KRRELSTSSS IAGPSEIEYC STAAPSFASA VEGGEVVTSQ ETCTAPTTRQ
201: PQRTRQNRED DFDLDLEDIM VMEAIWLSIQ ENGRNRSMDY SDVGPSEQYT EEDHRCVPAV NPTASGSSSS PSGGLACAIA ALAERQQMSG ESSSYSRNMS
301: SSYNEHPSCD RFSNGEELEN DDYPHAEGTM HVSPESHLEI PREDGEWADH GSMVAEVGTS YAVSDEMEDD ASFPLQGEMV SDLQPNTSSI VPENFEEQMM
401: LAMAVSLAEA SARSSPPGVA WH
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.