Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79263 | Canola | cytosol | 55.65 | 51.49 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 32.26 | 41.67 |
| CDY64724 | Canola | cytosol | 48.39 | 27.03 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 33.87 | 21.54 |
| CDY26863 | Canola | nucleus | 51.61 | 17.16 |
| CDY26864 | Canola | nucleus | 51.61 | 17.16 |
| CDY65128 | Canola | nucleus | 45.16 | 16.92 |
| AT1G78420.1 | Thale cress | nucleus | 53.23 | 16.46 |
| Os06t0154900-01 | Rice | nucleus | 34.68 | 16.29 |
| CDY48470 | Canola | nucleus | 42.74 | 16.11 |
| Zm00001d036228_P001 | Maize | cytosol | 32.26 | 15.94 |
| CDX88446 | Canola | nucleus | 50.81 | 15.83 |
| CDY52445 | Canola | nucleus | 50.81 | 15.48 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 45.97 | 14.5 |
| Solyc07g056630.2.1 | Tomato | nucleus | 47.58 | 13.98 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 45.97 | 13.44 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 45.97 | 13.41 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 45.16 | 13.18 |
| KXG29907 | Sorghum | cytosol | 45.16 | 13.05 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 44.35 | 13.03 |
| Os02t0244100-01 | Rice | nucleus | 44.35 | 13.0 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 44.35 | 12.97 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 42.74 | 12.8 |
| Zm00001d053448_P001 | Maize | nucleus | 44.35 | 12.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.74 | 12.71 |
| Zm00001d016164_P003 | Maize | nucleus | 44.35 | 12.67 |
| GSMUA_Achr10P... | Banana | nucleus | 39.52 | 12.56 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 37.1 | 12.47 |
| KRH21787 | Soybean | nucleus | 42.74 | 12.3 |
| KRH13587 | Soybean | nucleus | 41.13 | 11.92 |
| EER87870 | Sorghum | nucleus | 37.1 | 11.0 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 37.1 | 10.98 |
| Zm00001d045309_P001 | Maize | nucleus | 37.1 | 10.98 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 37.1 | 10.0 |
Protein Annotations
| EnsemblPlants:CDX68014 | EnsemblPlantsGene:GSBRNA2T00099233001 | GO:A0A078BW59 | ncoils:Coil | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 |
| ProteinID:CDX68014 | ProteinID:CDX68014.1 | TMHMM:TMhelix | UniParc:UPI0004EF19D8 | MapMan:19.2.2.1.5.3.6 | : |
Description
BnaA07g20540D
Coordinates
chrLK031787:-:3349171..3349820
Molecular Weight (calculated)
14356.4 Da
IEP (calculated)
8.836
GRAVY (calculated)
-0.451
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKAIRTNFR ENHSLRCPFC KTPNYAVEYR GVKTKEEKSI EQVEEQRVIE ARIRMMQNEK QDYEDKLQKR LELCSSSTSA ITGEFEHCSA AGRFCVKSSN
101: QKHMFIILIG FILCALVFAA KTIN
101: QKHMFIILIG FILCALVFAA KTIN
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.