Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64724 | Canola | cytosol | 44.89 | 81.08 |
| Bra008360.1-P | Field mustard | nucleus | 73.82 | 78.93 |
| CDY26864 | Canola | nucleus | 73.07 | 78.55 |
| CDY52445 | Canola | nucleus | 78.8 | 77.64 |
| CDY26863 | Canola | nucleus | 72.07 | 77.48 |
| Bra035036.1-P | Field mustard | nucleus | 78.55 | 77.4 |
| CDX88446 | Canola | nucleus | 75.31 | 75.88 |
| CDX79263 | Canola | cytosol | 22.69 | 67.91 |
| AT1G17145.1 | Thale cress | nucleus | 50.62 | 60.6 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 54.36 | 55.47 |
| CDX68014 | Canola | cytosol | 16.46 | 53.23 |
| Solyc07g056630.2.1 | Tomato | nucleus | 55.11 | 52.37 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 12.22 | 51.04 |
| KRH13587 | Soybean | nucleus | 54.11 | 50.7 |
| KRH21787 | Soybean | nucleus | 54.11 | 50.35 |
| GSMUA_Achr10P... | Banana | nucleus | 48.13 | 49.49 |
| Os06t0154900-01 | Rice | nucleus | 30.42 | 46.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.63 | 45.8 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 45.14 | 43.72 |
| KXG29907 | Sorghum | cytosol | 45.64 | 42.66 |
| Zm00001d036228_P001 | Maize | cytosol | 26.68 | 42.63 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 44.39 | 42.18 |
| Zm00001d053448_P001 | Maize | nucleus | 45.14 | 42.0 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 44.39 | 41.98 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 44.39 | 41.88 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 44.14 | 41.75 |
| Zm00001d016164_P003 | Maize | nucleus | 45.14 | 41.71 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 43.89 | 41.41 |
| Os02t0244100-01 | Rice | nucleus | 42.14 | 39.95 |
| EER87870 | Sorghum | nucleus | 41.15 | 39.47 |
| Zm00001d045309_P001 | Maize | nucleus | 40.9 | 39.14 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 39.9 | 38.19 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 39.9 | 34.78 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 30.42 | 33.06 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 15.21 | 31.28 |
Protein Annotations
| MapMan:19.2.2.1.5.3.6 | EntrezGene:844178 | UniProt:A0A178WG89 | ProteinID:AEE36103.1 | ProteinID:AEE36104.1 | ArrayExpress:AT1G78420 |
| EnsemblPlantsGene:AT1G78420 | RefSeq:AT1G78420 | TAIR:AT1G78420 | RefSeq:AT1G78420-TAIR-G | EnsemblPlants:AT1G78420.1 | TAIR:AT1G78420.1 |
| EMBL:AY059751 | EMBL:AY091398 | Unigene:At.14800 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | InterPro:IPR001841 | RefSeq:NP_001185425.1 | RefSeq:NP_565180.1 | ProteinID:OAP17367.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR31315 | UniProt:Q93YV5 | UniParc:UPI00000A61E4 | InterPro:Znf_RING |
| SEG:seg | : | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
Coordinates
chr1:+:29504533..29507680
Molecular Weight (calculated)
45051.8 Da
IEP (calculated)
5.034
GRAVY (calculated)
-0.694
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.