Factsheet for TraesCS6A01G189300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G176900.1	Wheat	cytosol	97.64	97.41
TraesCS6B01G215300.1	Wheat	nucleus	96.93	96.93
HORVU6Hr1G044080.12	Barley	nucleus	93.87	93.65
Os02t0244100-01	Rice	nucleus	85.85	86.05
KXG29907	Sorghum	cytosol	83.25	82.28
Zm00001d053448_P001	Maize	nucleus	82.08	80.74
Zm00001d016164_P003	Maize	nucleus	81.13	79.26
CDY64724	Canola	cytosol	30.9	59.01
GSMUA_Achr10P...	Banana	nucleus	51.42	55.9
GSMUA_Achr2P20090_001	Banana	nucleus	53.54	53.79
GSMUA_Achr3P17550_001	Banana	nucleus	52.12	53.38
GSMUA_AchrUn_...	Banana	nucleus	51.89	52.76
VIT_19s0093g00620.t01	Wine grape	nucleus	45.05	48.6
CDX79263	Canola	cytosol	15.33	48.51
TraesCS7A01G501600.1	Wheat	mitochondrion	16.51	47.62
Solyc07g056630.2.1	Tomato	nucleus	47.17	47.39
CDY26864	Canola	nucleus	41.27	46.92
Bra008360.1-P	Field mustard	nucleus	41.04	46.4
CDY26863	Canola	nucleus	40.57	46.11
AT1G17145.1	Thale cress	nucleus	35.61	45.07
CDY48470	Canola	nucleus	34.67	44.68
KRH13587	Soybean	nucleus	44.81	44.39
CDX68014	Canola	cytosol	12.97	44.35
KRH21787	Soybean	nucleus	45.05	44.32
AT1G78420.1	Thale cress	nucleus	41.75	44.14
Bra025999.1-P	Field mustard	nucleus	34.2	43.94
CDY65128	Canola	nucleus	33.96	43.5
CDX88446	Canola	nucleus	40.8	43.47
Bra035036.1-P	Field mustard	nucleus	41.04	42.75
CDY52445	Canola	nucleus	41.04	42.75

Protein Annotations

EnsemblPlants:TraesCS6A01G189300.1	EnsemblPlantsGene:TraesCS6A01G189300	InterPro:IPR001841	InterPro:Znf_RING	PANTHER:PTHR31315	PANTHER:PTHR31315:SF2
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	MapMan:19.2.2.1.5.3.6	:	:

Description

No Description!

Coordinates

chr6A:+:237734835..237759808

Molecular Weight (calculated)

47258.6 Da

IEP (calculated)

5.235

GRAVY (calculated)

-0.585

Length

424 amino acids

Sequence
(BLAST)

001: MGNRIGGRRK AGVEERYTRP QGLYEHRDID QKKLRKLILE AKLAPCYPGA DDAAGGDLEE CPICFLYYPS LNRSKCCSKG ICTECFLQMK PTHTARPTQC
101: PFCKTPNYAV EYRGVKTKEE RSIEQFEEQK VIEAQMRVRQ QALQDEEDKM KRKQSRCSSS RTIAPTTEVE YRDICSTSYS VPSYQCTQQE TECCSSEPSC
201: SAQANMRSFH SRHTRDDNID MNIEDMMVME AIWRSIQEQG SIGNPSCGSF MPFEQPTRER QAFVAAPPLE MPHPGGFSCA VAAMAEHQPS SMDFSYMTGS
301: SAFPVFDMFR RPCNIAGGSM GAAESSPDSW SGIAPSCSRR EVVREEGECS TDHLSEGAEA GTSYAGSDIV VDAGTMLPLP FADNYSMVAS HFRPESIEEQ
401: MMYSMAVSLA EAHGRTHTQG LAWL

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.