CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13587	Soybean	nucleus	90.72	91.36
VIT_19s0093g00620.t01	Wine grape	nucleus	61.25	67.18
CDY64724	Canola	cytosol	34.11	66.22
AT1G17145.1	Thale cress	nucleus	47.56	61.19
Solyc07g056630.2.1	Tomato	nucleus	58.47	59.72
CDY48470	Canola	nucleus	45.24	59.27
CDX79263	Canola	cytosol	18.33	58.96
CDY65128	Canola	nucleus	45.24	58.91
Bra025999.1-P	Field mustard	nucleus	45.01	58.79
CDY26864	Canola	nucleus	49.88	57.64
Bra008360.1-P	Field mustard	nucleus	49.88	57.33
HORVU7Hr1G024070.1	Barley	cytosol	12.76	57.29
CDY26863	Canola	nucleus	49.42	57.1
GSMUA_Achr10P...	Banana	nucleus	50.58	55.9
AT1G78420.1	Thale cress	nucleus	50.35	54.11
CDX88446	Canola	nucleus	49.88	54.02
CDY52445	Canola	nucleus	50.58	53.56
Bra035036.1-P	Field mustard	nucleus	49.88	52.83
GSMUA_AchrUn_...	Banana	nucleus	50.12	51.8
GSMUA_Achr3P17550_001	Banana	nucleus	48.72	50.72
GSMUA_Achr2P20090_001	Banana	nucleus	48.26	49.29
Os06t0154900-01	Rice	nucleus	29.7	48.48
Zm00001d036228_P001	Maize	cytosol	26.91	46.22
KXG29907	Sorghum	cytosol	45.48	45.69
Zm00001d053448_P001	Maize	nucleus	45.48	45.48
TraesCS6D01G176900.1	Wheat	cytosol	44.55	45.18
TraesCS6A01G189300.1	Wheat	nucleus	44.32	45.05
TraesCS6B01G215300.1	Wheat	nucleus	44.32	45.05
TraesCS7D01G107500.1	Wheat	nucleus	43.62	44.87
HORVU6Hr1G044080.12	Barley	nucleus	44.08	44.71
Zm00001d016164_P003	Maize	nucleus	44.32	44.01
EER87870	Sorghum	nucleus	42.46	43.78
Zm00001d045309_P001	Maize	nucleus	42.23	43.44
Os02t0244100-01	Rice	nucleus	42.46	43.26
CDX68014	Canola	cytosol	12.3	42.74
TraesCS7B01G010000.2	Wheat	nucleus	43.39	40.65
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	34.34	40.11
HORVU4Hr1G034450.1	Barley	cytosol	14.85	32.82

Protein Annotations

EMBL:ACUP02008363	EnsemblPlants:KRH21787	EnsemblPlantsGene:GLYMA_13G259100	EntrezGene:100816142	Gene3D:3.30.40.10	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31315	PFscan:PS50089	ProteinID:KRH21787	ProteinID:KRH21787.1	ProteinID:KRH21788.1
SEG:seg	SUPFAM:SSF57850	UniParc:UPI000233B3B5	UniProt:I1M2P6	MapMan:19.2.2.1.5.3.6	:

Description

hypothetical protein

Coordinates

chr13:+:36342871..36350571

Molecular Weight (calculated)

47927.8 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.647

Length

431 amino acids

Sequence
(BLAST)

001: MGNKLGRRRQ VVDEKYTRPQ GLYNHKDVDH KKLRKLILES KLAPCYPGDE ETAYDREECP ICFLYYPSLN RSRCCTKSIC TECFLQMKVP NSTRPTQCPF
101: CKTANYAVEY RGVKSKEEKG LEQIEEQRVI EAKIRMRQQE LQDEEERMHK RLEMSSSNVN VAVADVEYSS NAVSSSSVSV VENDEIVSSQ DSCATSVVRA
201: NATTRTNRDD EFDVDLEDIM VMEAIWLSIQ ENGRRRNLSF VDATSGHYVA DGRYVSSVSS VSSVMGPPTG SSSSPSGGLA CAIAALAERQ QMAGESSMSL
301: TNENMPSFNT LPGSRRFYNR LGRDMANYPP GDNLNEEPLD EAVTMTRSHG EWDMDHGTQL TETATSYTNS VAAEDRGELS SLPRSDDNDG SLQSATEPIV
401: PESFEEQMML AMAVSLAEAR AMSSGQSASW Q

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.