Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G024070.1 | Barley | cytosol | 23.85 | 91.67 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 90.24 | 79.47 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 88.35 | 70.87 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 31.71 | 60.0 |
| EER87870 | Sorghum | nucleus | 65.04 | 57.42 |
| Zm00001d045309_P001 | Maize | nucleus | 63.14 | 55.61 |
| Os06t0154900-01 | Rice | nucleus | 33.6 | 46.97 |
| Zm00001d036228_P001 | Maize | cytosol | 30.62 | 45.02 |
| GSMUA_Achr10P... | Banana | nucleus | 42.82 | 40.51 |
| CDX79263 | Canola | cytosol | 14.63 | 40.3 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 42.55 | 37.2 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 39.57 | 37.15 |
| CDX68014 | Canola | cytosol | 12.47 | 37.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.73 | 36.93 |
| Solyc07g056630.2.1 | Tomato | nucleus | 42.01 | 36.73 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 40.65 | 36.23 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 40.92 | 35.53 |
| CDY64724 | Canola | cytosol | 21.14 | 35.14 |
| KRH13587 | Soybean | nucleus | 40.11 | 34.58 |
| KRH21787 | Soybean | nucleus | 40.11 | 34.34 |
| Bra025999.1-P | Field mustard | nucleus | 30.62 | 34.24 |
| CDY65128 | Canola | nucleus | 30.62 | 34.14 |
| CDY48470 | Canola | nucleus | 30.08 | 33.74 |
| CDY26863 | Canola | nucleus | 33.88 | 33.51 |
| CDY26864 | Canola | nucleus | 33.88 | 33.51 |
| Bra008360.1-P | Field mustard | nucleus | 33.88 | 33.33 |
| AT1G17145.1 | Thale cress | nucleus | 29.81 | 32.84 |
| CDX88446 | Canola | nucleus | 34.96 | 32.41 |
| CDY52445 | Canola | nucleus | 34.96 | 31.7 |
| Bra035036.1-P | Field mustard | nucleus | 34.96 | 31.7 |
| AT1G78420.1 | Thale cress | nucleus | 33.06 | 30.42 |
| HORVU7Hr1G112680.2 | Barley | plastid | 10.3 | 18.45 |
| HORVU7Hr1G112810.5 | Barley | cytosol, plastid | 10.57 | 17.97 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G023990.18 | EnsemblPlantsGene:HORVU7Hr1G023990 | ncoils:Coil | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | SEG:seg |
| UniParc:UPI000B470B75 | UniProt:A0A287VQB2 | MapMan:19.2.2.1.5.3.6 | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:37833785..37838328
Molecular Weight (calculated)
39263.7 Da
IEP (calculated)
4.375
GRAVY (calculated)
-0.391
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNSEQSLIL PLQFYPSLNR SKCCAKGICT AECFLQMKSP TSCRPTQCPY CKMLNYAVEY RGVKTKEEKG VEQIEEQRVI EAQIRMRHQE LQDDAERLKN
101: KQVAASTDEV TTARVEPCDT GGTSTPAASG AQGNDVPSCQ VQHSELLLKN AERLRQLRDN NFDMDLEEVM LMEAIWLSVQ DQEALGNPGS IGAVPPTLPL
201: RCYDASGATS AEAAPPGGFA CAVAALAEQQ HMLGDPSSAA TCQTSRHDIL SRSQRSFTED LSIAGSSSSA IRVEEPPSNS RTPQARDGTD YSNNDGWSDA
301: AEASTSCAGS DVTVDAGAAS LAAAAASDVS SIGSGNVPDS FEEQMMLAMA LSLVDARGVG GSPPALAWR
101: KQVAASTDEV TTARVEPCDT GGTSTPAASG AQGNDVPSCQ VQHSELLLKN AERLRQLRDN NFDMDLEEVM LMEAIWLSVQ DQEALGNPGS IGAVPPTLPL
201: RCYDASGATS AEAAPPGGFA CAVAALAEQQ HMLGDPSSAA TCQTSRHDIL SRSQRSFTED LSIAGSSSSA IRVEEPPSNS RTPQARDGTD YSNNDGWSDA
301: AEASTSCAGS DVTVDAGAAS LAAAAASDVS SIGSGNVPDS FEEQMMLAMA LSLVDARGVG GSPPALAWR
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.