CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045309_P001	Maize	nucleus	89.0	88.78
Zm00001d036228_P001	Maize	cytosol	45.22	75.3
HORVU7Hr1G024070.1	Barley	cytosol	16.51	71.88
TraesCS7D01G107500.1	Wheat	nucleus	70.81	70.64
Os06t0154900-01	Rice	nucleus	42.11	66.67
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	57.42	65.04
TraesCS7B01G010000.2	Wheat	nucleus	70.57	64.13
CDY64724	Canola	cytosol	27.99	52.7
GSMUA_Achr10P...	Banana	nucleus	48.33	51.79
GSMUA_AchrUn_...	Banana	nucleus	48.8	48.92
VIT_19s0093g00620.t01	Wine grape	nucleus	45.93	48.85
KXG29907	Sorghum	cytosol	48.8	47.55
Solyc07g056630.2.1	Tomato	nucleus	47.37	46.92
CDY26864	Canola	nucleus	40.91	45.84
CDY26863	Canola	nucleus	40.91	45.84
HORVU4Hr1G034450.1	Barley	cytosol	21.29	45.64
OQU76797	Sorghum	mitochondrion	17.46	45.62
Bra008360.1-P	Field mustard	nucleus	40.67	45.33
GSMUA_Achr3P17550_001	Banana	nucleus	44.74	45.17
CDX79263	Canola	cytosol	14.11	44.03
AT1G17145.1	Thale cress	nucleus	34.93	43.58
GSMUA_Achr2P20090_001	Banana	nucleus	43.78	43.36
Bra025999.1-P	Field mustard	nucleus	33.97	43.03
CDY48470	Canola	nucleus	33.73	42.86
KRH13587	Soybean	nucleus	43.78	42.76
CDY65128	Canola	nucleus	33.73	42.6
KRH21787	Soybean	nucleus	43.78	42.46
AT1G78420.1	Thale cress	nucleus	39.47	41.15
CDX88446	Canola	nucleus	38.04	39.95
Bra035036.1-P	Field mustard	nucleus	38.52	39.56
CDY52445	Canola	nucleus	38.28	39.31
CDX68014	Canola	cytosol	11.0	37.1

Protein Annotations

EnsemblPlants:EER87870	EnsemblPlantsGene:SORBI_3010G043400	EntrezGene:8071338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	ncoils:Coil	PANTHER:PTHR31315	PANTHER:PTHR31315:SF2	ProteinID:EER87870	ProteinID:EER87870.1
RefSeq:XP_002436503.1	SEG:seg	unigene:Sbi.1181	UniParc:UPI0001A8900D	UniProt:C5Z4D4	MapMan:19.2.2.1.5.3.6

Description

hypothetical protein

Coordinates

chr10:+:3373914..3378135

Molecular Weight (calculated)

45165.6 Da

IEP (calculated)

4.704

GRAVY (calculated)

-0.493

Length

418 amino acids

Sequence
(BLAST)

001: MGNQVGGRRR RRPAVDERYT QPQGLYPHPD IDLRKLRRLI LEAKLAPCHP GADDARADLD ECPICFLFYP SLNRSKCCAK GICTECFLQM KSPTSCRPTQ
101: CPYCKTLNYA VEYRGVKTKE EKGIEQLEEQ RVIEAQIRMR QKELQDDAER MKNKQTATLG DIVASAQVDS CNTDGASTGA ASSPQGSDAI SSEVQHSELI
201: LRNSEAFKQM RGNNFDVDLE EVMLMEAIWL SIQDQEALGN SGCVSTTPSS IPSRPFDGAM TTTPEAASSG GFAFAVAALA EQQHMHGESS SASACQTPRF
301: DILSRSDRSS TEDLSVVGSS SSDSRVEEPS SSSTHRTIEG SEYSNSNGRW SEVAEAGTSI AEADVIVEAG VGNSSTSVGS NIGSSSVPDS FEEQMMLAMA
401: LSLVDARSRA GSPGLAWR

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.