Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G107500.1 | Wheat | nucleus | 86.52 | 94.99 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 18.7 | 89.58 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 70.87 | 88.35 |
| EER87870 | Sorghum | nucleus | 64.13 | 70.57 |
| Zm00001d045309_P001 | Maize | nucleus | 63.26 | 69.45 |
| Os06t0154900-01 | Rice | nucleus | 38.04 | 66.29 |
| Zm00001d036228_P001 | Maize | cytosol | 35.87 | 65.74 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 24.78 | 58.46 |
| CDY64724 | Canola | cytosol | 25.0 | 51.8 |
| GSMUA_Achr10P... | Banana | nucleus | 43.7 | 51.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.83 | 47.24 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 42.83 | 46.68 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 39.78 | 46.56 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 41.74 | 46.38 |
| TraesCS7B01G409000.1 | Wheat | mitochondrion | 14.78 | 46.26 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 42.39 | 45.99 |
| Solyc07g056630.2.1 | Tomato | nucleus | 41.74 | 45.5 |
| Bra025999.1-P | Field mustard | nucleus | 32.17 | 44.85 |
| CDY65128 | Canola | nucleus | 31.96 | 44.41 |
| CDY48470 | Canola | nucleus | 31.3 | 43.77 |
| KRH13587 | Soybean | nucleus | 40.65 | 43.69 |
| CDY26863 | Canola | nucleus | 35.22 | 43.43 |
| CDY26864 | Canola | nucleus | 35.22 | 43.43 |
| KRH21787 | Soybean | nucleus | 40.65 | 43.39 |
| CDX79263 | Canola | cytosol | 12.61 | 43.28 |
| AT1G17145.1 | Thale cress | nucleus | 31.52 | 43.28 |
| Bra008360.1-P | Field mustard | nucleus | 35.22 | 43.2 |
| CDX88446 | Canola | nucleus | 35.43 | 40.95 |
| CDY52445 | Canola | nucleus | 35.65 | 40.29 |
| Bra035036.1-P | Field mustard | nucleus | 35.43 | 40.05 |
| AT1G78420.1 | Thale cress | nucleus | 34.78 | 39.9 |
| CDX68014 | Canola | cytosol | 10.0 | 37.1 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G010000.2 | EnsemblPlantsGene:TraesCS7B01G010000 | ncoils:Coil | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | SEG:seg |
| MapMan:19.2.2.1.5.3.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:6150092..6154181
Molecular Weight (calculated)
49548.4 Da
IEP (calculated)
5.020
GRAVY (calculated)
-0.394
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRVGGRRR RSPVDERYTA PQGLYPHPDI DLKKLRRLIL EAKLAPCHPG ADDPRPDLDE CPICFLVSPF ITPFPISAQL LLLPLSTWIH HRCRILTRAS
101: PPLPRLQFYP SLNRSKCCAK GICTECFLQM KSPTSCRPTQ CPYCKMLNYA VEYRGVKTKE EKGVEQIEEQ RVIEAQIRMR HQELQDDAER LKNKQVAAST
201: DEVTIAQVEP CDTGGTSTPA ASGAQGNDAV SGQVQHSELL LKNAERLRQL RDNNFDMDLE EVMLMEAIWL SVQDQEALGN PGSIGAVPPT LPPRCYDASG
301: AASAEAAPPG GFACAVAALA EQQHMLGDPS SAATCQTSRH DILSRSQRSF TEDLSIAGSS SSATRVEEPP NGRTPQSRDG ADYSNNDGWS EAAEASTSCA
401: GSDITVEAGA ASLAAAASDV SSIGSGNVPD SFEEQMMLAM ALSLVDARGV GGSPPGLAWR
101: PPLPRLQFYP SLNRSKCCAK GICTECFLQM KSPTSCRPTQ CPYCKMLNYA VEYRGVKTKE EKGVEQIEEQ RVIEAQIRMR HQELQDDAER LKNKQVAAST
201: DEVTIAQVEP CDTGGTSTPA ASGAQGNDAV SGQVQHSELL LKNAERLRQL RDNNFDMDLE EVMLMEAIWL SVQDQEALGN PGSIGAVPPT LPPRCYDASG
301: AASAEAAPPG GFACAVAALA EQQHMLGDPS SAATCQTSRH DILSRSQRSF TEDLSIAGSS SSATRVEEPP NGRTPQSRDG ADYSNNDGWS EAAEASTSCA
401: GSDITVEAGA ASLAAAASDV SSIGSGNVPD SFEEQMMLAM ALSLVDARGV GGSPPGLAWR
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.