Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G024070.1 | Barley | cytosol | 42.56 | 86.46 |
| Os06t0154900-01 | Rice | nucleus | 46.67 | 34.47 |
| CDX68014 | Canola | cytosol | 21.54 | 33.87 |
| Zm00001d036228_P001 | Maize | cytosol | 41.03 | 31.87 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 60.0 | 31.71 |
| CDX79263 | Canola | cytosol | 20.51 | 29.85 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 57.95 | 26.97 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 58.46 | 24.78 |
| CDY64724 | Canola | cytosol | 25.64 | 22.52 |
| EER87870 | Sorghum | nucleus | 45.64 | 21.29 |
| Zm00001d045309_P001 | Maize | nucleus | 42.05 | 19.57 |
| CDY65128 | Canola | nucleus | 28.21 | 16.62 |
| Solyc07g056630.2.1 | Tomato | nucleus | 35.9 | 16.59 |
| AT1G17145.1 | Thale cress | nucleus | 28.21 | 16.42 |
| Bra025999.1-P | Field mustard | nucleus | 27.69 | 16.36 |
| CDY26864 | Canola | nucleus | 31.28 | 16.35 |
| CDY26863 | Canola | nucleus | 31.28 | 16.35 |
| Bra008360.1-P | Field mustard | nucleus | 31.28 | 16.27 |
| GSMUA_Achr10P... | Banana | nucleus | 32.31 | 16.15 |
| CDY48470 | Canola | nucleus | 27.18 | 16.11 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 32.31 | 16.03 |
| AT1G78420.1 | Thale cress | nucleus | 31.28 | 15.21 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 31.79 | 14.98 |
| KRH13587 | Soybean | nucleus | 32.82 | 14.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.79 | 14.87 |
| KRH21787 | Soybean | nucleus | 32.82 | 14.85 |
| CDX88446 | Canola | nucleus | 30.26 | 14.82 |
| CDY52445 | Canola | nucleus | 30.77 | 14.74 |
| Bra035036.1-P | Field mustard | nucleus | 30.77 | 14.74 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 31.79 | 14.69 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 29.74 | 13.65 |
| HORVU7Hr1G112680.2 | Barley | plastid | 7.18 | 6.8 |
| HORVU7Hr1G112810.5 | Barley | cytosol, plastid | 7.18 | 6.45 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G034450.1 | EnsemblPlantsGene:HORVU4Hr1G034450 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | ncoils:Coil |
| PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B4721B3 | UniProt:A0A287NS03 |
| MapMan:19.2.2.1.5.3.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:249200443..249204031
Molecular Weight (calculated)
21922.2 Da
IEP (calculated)
7.851
GRAVY (calculated)
-0.554
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSPTSRRPT QCPYYKMLNY AVEYRGVKTK EEKGVEQIEG QRVIEAQIRM RHQELQDDAE RLMNKQVAAS TNEVTTARVE PCDTGGTSTS AASGAQGNDA
101: PSCQVNHSEL LLKNAEGLTQ LRMHWLTIFR LLSCLTCVAM VASVNSGYVV YRRVLRYYSG EEDGLDMRKA LSQDVDKKSI IPLKRPITPG ELEYD
101: PSCQVNHSEL LLKNAEGLTQ LRMHWLTIFR LLSCLTCVAM VASVNSGYVV YRRVLRYYSG EEDGLDMRKA LSQDVDKKSI IPLKRPITPG ELEYD
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.