Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52445 | Canola | nucleus | 97.3 | 97.3 |
| Bra008360.1-P | Field mustard | nucleus | 76.17 | 82.67 |
| AT1G78420.1 | Thale cress | nucleus | 77.4 | 78.55 |
| Bra025999.1-P | Field mustard | nucleus | 47.91 | 59.09 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 54.55 | 56.49 |
| Solyc07g056630.2.1 | Tomato | nucleus | 55.04 | 53.08 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 12.04 | 51.04 |
| GSMUA_Achr10P... | Banana | nucleus | 48.65 | 50.77 |
| KRH21787 | Soybean | nucleus | 52.83 | 49.88 |
| KRH13587 | Soybean | nucleus | 51.35 | 48.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.93 | 45.8 |
| Os06t0154900-01 | Rice | nucleus | 29.48 | 45.45 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 44.72 | 43.96 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 44.23 | 42.65 |
| Zm00001d036228_P001 | Maize | cytosol | 26.04 | 42.23 |
| KXG29907 | Sorghum | cytosol | 44.47 | 42.19 |
| Zm00001d053448_P001 | Maize | nucleus | 44.23 | 41.76 |
| Zm00001d016164_P003 | Maize | nucleus | 44.47 | 41.71 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 42.75 | 41.04 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 42.75 | 41.04 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 42.75 | 40.94 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 42.75 | 40.94 |
| Os02t0244100-01 | Rice | nucleus | 41.28 | 39.72 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 40.29 | 39.14 |
| Zm00001d045309_P001 | Maize | nucleus | 39.8 | 38.66 |
| EER87870 | Sorghum | nucleus | 39.56 | 38.52 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 40.05 | 35.43 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 31.7 | 34.96 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 14.74 | 30.77 |
Protein Annotations
Description
AT1G78420 (E=4e-140) | protein binding / zinc ion binding
Coordinates
chrA07:+:21886240..21888404
Molecular Weight (calculated)
45972.4 Da
IEP (calculated)
4.820
GRAVY (calculated)
-0.834
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKLVGRKR QVVEERYTKP QGLYVNTDVD IKKLRKLIVE SKLAPCYPGD DESCHELEEC PICFLYYPSL NRSRCCMKSI CTECFLQMKN PNSARPTQCP
101: FCKTPNYAVE YRGVKTKEEK GMEQVEEQRV IEAKIRMRQK EMEDDEEKMQ KRMESSCSSS TSAVTGEMEY GSAASAISYN DPMEDAETSS SQNVSVARQR
201: SRRPRGNRDD EVEADLEELM VMEAIWLSMQ ETGTQRDSGG GEVTPFRQYV SEEDHSYAEP ATPSSSSGGL PCAISALAEQ RQQMVGESSN HNHNHNVNVS
301: LYSMLPGNCD SYYDIEQETD DIDHHHHHHH HQQHNYYHGN TEMGETGSSS SYMNGSESFH NFPLPPPPPL VIAPESFEEQ MMMAMAVSLA EVHATTTTSA
401: PTEVTWQ
101: FCKTPNYAVE YRGVKTKEEK GMEQVEEQRV IEAKIRMRQK EMEDDEEKMQ KRMESSCSSS TSAVTGEMEY GSAASAISYN DPMEDAETSS SQNVSVARQR
201: SRRPRGNRDD EVEADLEELM VMEAIWLSMQ ETGTQRDSGG GEVTPFRQYV SEEDHSYAEP ATPSSSSGGL PCAISALAEQ RQQMVGESSN HNHNHNVNVS
301: LYSMLPGNCD SYYDIEQETD DIDHHHHHHH HQQHNYYHGN TEMGETGSSS SYMNGSESFH NFPLPPPPPL VIAPESFEEQ MMMAMAVSLA EVHATTTTSA
401: PTEVTWQ
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.