Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053448_P001 | Maize | nucleus | 95.34 | 94.9 |
| Zm00001d016164_P003 | Maize | nucleus | 95.1 | 94.01 |
| Os02t0244100-01 | Rice | nucleus | 83.22 | 84.4 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 83.45 | 84.24 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 82.52 | 83.49 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 82.28 | 83.25 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 81.82 | 82.59 |
| CDY64724 | Canola | cytosol | 30.3 | 58.56 |
| GSMUA_Achr10P... | Banana | nucleus | 51.05 | 56.15 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 54.78 | 55.69 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 53.61 | 55.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.98 | 53.48 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 46.15 | 50.38 |
| CDX79263 | Canola | cytosol | 15.62 | 50.0 |
| CDY26864 | Canola | nucleus | 42.66 | 49.06 |
| EER87870 | Sorghum | nucleus | 47.55 | 48.8 |
| Bra008360.1-P | Field mustard | nucleus | 42.66 | 48.8 |
| Solyc07g056630.2.1 | Tomato | nucleus | 47.79 | 48.58 |
| CDY26863 | Canola | nucleus | 42.19 | 48.53 |
| OQU76797 | Sorghum | mitochondrion | 17.48 | 46.88 |
| AT1G17145.1 | Thale cress | nucleus | 36.6 | 46.87 |
| CDY48470 | Canola | nucleus | 35.66 | 46.5 |
| CDY65128 | Canola | nucleus | 35.43 | 45.92 |
| Bra025999.1-P | Field mustard | nucleus | 35.2 | 45.76 |
| AT1G78420.1 | Thale cress | nucleus | 42.66 | 45.64 |
| KRH21787 | Soybean | nucleus | 45.69 | 45.48 |
| CDX68014 | Canola | cytosol | 13.05 | 45.16 |
| KRH13587 | Soybean | nucleus | 44.99 | 45.09 |
| CDX88446 | Canola | nucleus | 41.49 | 44.72 |
| CDY52445 | Canola | nucleus | 42.42 | 44.72 |
| Bra035036.1-P | Field mustard | nucleus | 42.19 | 44.47 |
Protein Annotations
| EnsemblPlants:KXG29907 | EnsemblPlantsGene:SORBI_3004G107300 | InterPro:IPR001841 | InterPro:Znf_RING | ncoils:Coil | PANTHER:PTHR31315 |
| PANTHER:PTHR31315:SF2 | PFscan:PS50089 | ProteinID:KXG29907 | ProteinID:KXG29907.1 | SEG:seg | SUPFAM:SSF57850 |
| UniParc:UPI0007F221E7 | UniProt:A0A194YNY3 | MapMan:19.2.2.1.5.3.6 | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:10267920..10272896
Molecular Weight (calculated)
47906.4 Da
IEP (calculated)
5.355
GRAVY (calculated)
-0.590
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRIGGRRK SGVEERFTRP QGLYEHKDID QKKLRKLILE AKLAPCYPGA DDAAAAGGDL EECPICFLYY PSLNRSKCCS KGICTECFLQ MKPTHTARPT
101: QCPFCKTPNY AVEYRGVKTK EERSIEQFEE QKVIEAQLRM RQKELQDEEA KMKRKQSRCS SSRTVTPTTE VEYRDICSTS FSVPSYQCTE QGNECCSSEP
201: SCSSQANMRP FHSRHNRDDN VDVNLEDMMV MEAIWRSIQQ EQGHLVNPVC GSYFPVIEPP SRERQAFLPA APLEMPHPGG YSCAVAALAE HQPASMDFSY
301: MAGSSTYPVF DMIRRPCNMS SGSLCGVENS SLDTWSGIAP SCSREVVREE GECSTDHWSE GAEAGTSYAG SDIMADTGTM QPLPFAENFT MAPSHFRPES
401: IEEQMMFSMA VSLAEAHHGR TQAQGLAWL
101: QCPFCKTPNY AVEYRGVKTK EERSIEQFEE QKVIEAQLRM RQKELQDEEA KMKRKQSRCS SSRTVTPTTE VEYRDICSTS FSVPSYQCTE QGNECCSSEP
201: SCSSQANMRP FHSRHNRDDN VDVNLEDMMV MEAIWRSIQQ EQGHLVNPVC GSYFPVIEPP SRERQAFLPA APLEMPHPGG YSCAVAALAE HQPASMDFSY
301: MAGSSTYPVF DMIRRPCNMS SGSLCGVENS SLDTWSGIAP SCSREVVREE GECSTDHWSE GAEAGTSYAG SDIMADTGTM QPLPFAENFT MAPSHFRPES
401: IEEQMMFSMA VSLAEAHHGR TQAQGLAWL
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.