Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 69.78 | 74.62 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 62.35 | 62.8 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 63.31 | 62.56 |
| CDY64724 | Canola | cytosol | 30.7 | 57.66 |
| GSMUA_Achr1P10200_001 | Banana | nucleus | 22.06 | 56.44 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 12.47 | 54.17 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 50.84 | 53.94 |
| KXG29907 | Sorghum | cytosol | 53.48 | 51.98 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 52.76 | 51.89 |
| Solyc07g056630.2.1 | Tomato | nucleus | 52.28 | 51.66 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 52.52 | 51.65 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 52.52 | 51.53 |
| Zm00001d053448_P001 | Maize | nucleus | 53.24 | 51.51 |
| AT1G17145.1 | Thale cress | nucleus | 41.01 | 51.04 |
| Os02t0244100-01 | Rice | nucleus | 51.56 | 50.83 |
| CDX79263 | Canola | cytosol | 16.31 | 50.75 |
| KRH13587 | Soybean | nucleus | 51.8 | 50.47 |
| CDY26864 | Canola | nucleus | 45.08 | 50.4 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 51.32 | 50.35 |
| Bra008360.1-P | Field mustard | nucleus | 45.08 | 50.13 |
| KRH21787 | Soybean | nucleus | 51.8 | 50.12 |
| Zm00001d016164_P003 | Maize | nucleus | 52.04 | 50.0 |
| CDY26863 | Canola | nucleus | 44.6 | 49.87 |
| Os06t0154900-01 | Rice | nucleus | 30.94 | 48.86 |
| EER87870 | Sorghum | nucleus | 48.92 | 48.8 |
| Bra025999.1-P | Field mustard | nucleus | 38.13 | 48.18 |
| CDY65128 | Canola | nucleus | 38.13 | 48.04 |
| CDY48470 | Canola | nucleus | 37.89 | 48.02 |
| CDX88446 | Canola | nucleus | 45.56 | 47.74 |
| AT1G78420.1 | Thale cress | nucleus | 45.8 | 47.63 |
| Zm00001d045309_P001 | Maize | nucleus | 47.72 | 47.49 |
| CDY52445 | Canola | nucleus | 45.8 | 46.93 |
| Bra035036.1-P | Field mustard | nucleus | 45.8 | 46.93 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 47.0 | 46.78 |
| Zm00001d036228_P001 | Maize | cytosol | 27.82 | 46.22 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 47.24 | 42.83 |
| CDX68014 | Canola | cytosol | 12.71 | 42.74 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 36.93 | 41.73 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 14.87 | 31.79 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP21660_001 | EnsemblPlants:GSMUA_AchrUn_randomT21660_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG21660_001 | ncoils:Coil | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 |
| SEG:seg | UniParc:UPI0002958A35 | UniProt:M0UB74 | MapMan:19.2.2.1.5.3.6 | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21660_001]
Coordinates
chrchrUn_random:-:105911841..105916555
Molecular Weight (calculated)
46259.5 Da
IEP (calculated)
6.555
GRAVY (calculated)
-0.651
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNNIRRRRQ MVDEKYTRPQ GMYRHREIDY KKLRKLILES KLAPCYPGLE EYAYDLEECP ICFLYYPSLN RSRCCMKGIC TECFLQMKPP HSTRPSQCPF
101: CKTSNYAVEY HGAKTKEEKG MEQVEEQKVI EAQIRIRQQE LQDEAERMKK RQNLSSSSRT MTPTDVGHHD ISNTSTSVPS MKCSIQSSDL GSRQASCSAP
201: ASTRPSQLRQ NRDNNLDLDL EDVMVMEAIW LSIQEQGSQG NPSCVGSYLP RPSTSGEWHS SHGTAPMRPS SSGGLACAAA ALAERQHMHG NSAVHMAIDN
301: AAACDMLQRS GSSSPGITRF VHDNPSGRWT EISPDNGREV HGQEFGECLA DHQSEVAEAG TSYNVETGAM TGPLSEGVSI PPGHFVPESF EEQMMLAMAV
401: SLAEARARMS NHGVSLL
101: CKTSNYAVEY HGAKTKEEKG MEQVEEQKVI EAQIRIRQQE LQDEAERMKK RQNLSSSSRT MTPTDVGHHD ISNTSTSVPS MKCSIQSSDL GSRQASCSAP
201: ASTRPSQLRQ NRDNNLDLDL EDVMVMEAIW LSIQEQGSQG NPSCVGSYLP RPSTSGEWHS SHGTAPMRPS SSGGLACAAA ALAERQHMHG NSAVHMAIDN
301: AAACDMLQRS GSSSPGITRF VHDNPSGRWT EISPDNGREV HGQEFGECLA DHQSEVAEAG TSYNVETGAM TGPLSEGVSI PPGHFVPESF EEQMMLAMAV
401: SLAEARARMS NHGVSLL
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.