Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025999.1-P | Field mustard | nucleus | 76.42 | 77.58 |
| CDY65128 | Canola | nucleus | 76.42 | 77.34 |
| CDY48470 | Canola | nucleus | 74.63 | 75.99 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 14.63 | 51.04 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 59.4 | 50.64 |
| AT1G78420.1 | Thale cress | nucleus | 60.6 | 50.62 |
| KRH13587 | Soybean | nucleus | 61.19 | 47.9 |
| KRH21787 | Soybean | nucleus | 61.19 | 47.56 |
| Solyc07g056630.2.1 | Tomato | nucleus | 59.4 | 47.16 |
| GSMUA_Achr10P... | Banana | nucleus | 54.03 | 46.41 |
| Os06t0154900-01 | Rice | nucleus | 34.03 | 43.18 |
| Zm00001d036228_P001 | Maize | cytosol | 30.75 | 41.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.04 | 41.01 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 51.34 | 40.76 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 49.85 | 40.34 |
| KXG29907 | Sorghum | cytosol | 46.87 | 36.6 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 46.27 | 36.47 |
| Zm00001d053448_P001 | Maize | nucleus | 46.87 | 36.43 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 45.67 | 36.08 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 45.67 | 36.0 |
| Zm00001d016164_P003 | Maize | nucleus | 46.27 | 35.71 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 45.07 | 35.61 |
| Zm00001d045309_P001 | Maize | nucleus | 44.18 | 35.32 |
| Os02t0244100-01 | Rice | nucleus | 44.48 | 35.22 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 43.88 | 35.08 |
| EER87870 | Sorghum | nucleus | 43.58 | 34.93 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 43.28 | 31.52 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 32.84 | 29.81 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 16.42 | 28.21 |
Protein Annotations
| MapMan:19.2.2.1.5.3.6 | EntrezGene:838285 | ProteinID:AEE29549.1 | ArrayExpress:AT1G17145 | EnsemblPlantsGene:AT1G17145 | RefSeq:AT1G17145 |
| TAIR:AT1G17145 | RefSeq:AT1G17145-TAIR-G | EnsemblPlants:AT1G17145.1 | TAIR:AT1G17145.1 | EMBL:AY054649 | EMBL:AY088425 |
| EMBL:BT000039 | GO:GO:0008150 | InterPro:IPR001841 | RefSeq:NP_564016.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | UniProt:Q940G8 |
| SUPFAM:SSF57850 | UniParc:UPI00000AC346 | InterPro:Znf_RING | SEG:seg | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
Coordinates
chr1:-:5860078..5862890
Molecular Weight (calculated)
37697.7 Da
IEP (calculated)
4.585
GRAVY (calculated)
-0.849
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.