Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65128 | Canola | nucleus | 97.88 | 97.58 |
| AT1G17145.1 | Thale cress | nucleus | 77.58 | 76.42 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 14.55 | 50.0 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 59.09 | 49.62 |
| Bra008360.1-P | Field mustard | nucleus | 56.36 | 49.6 |
| Bra035036.1-P | Field mustard | nucleus | 59.09 | 47.91 |
| KRH13587 | Soybean | nucleus | 59.09 | 45.56 |
| Solyc07g056630.2.1 | Tomato | nucleus | 58.18 | 45.5 |
| KRH21787 | Soybean | nucleus | 58.79 | 45.01 |
| GSMUA_Achr10P... | Banana | nucleus | 51.52 | 43.59 |
| Os06t0154900-01 | Rice | nucleus | 33.64 | 42.05 |
| Zm00001d036228_P001 | Maize | cytosol | 29.39 | 38.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.18 | 38.13 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 47.58 | 37.2 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 46.36 | 36.96 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 45.15 | 35.56 |
| KXG29907 | Sorghum | cytosol | 45.76 | 35.2 |
| Zm00001d053448_P001 | Maize | nucleus | 45.76 | 35.03 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 44.55 | 34.59 |
| Os02t0244100-01 | Rice | nucleus | 44.24 | 34.52 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 44.24 | 34.43 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 44.24 | 34.35 |
| Zm00001d016164_P003 | Maize | nucleus | 45.15 | 34.33 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 43.94 | 34.2 |
| Zm00001d045309_P001 | Maize | nucleus | 43.33 | 34.13 |
| EER87870 | Sorghum | nucleus | 43.03 | 33.97 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 44.85 | 32.17 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 34.24 | 30.62 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 16.36 | 27.69 |
Protein Annotations
Description
AT1G17145 (E=1e-135) | protein binding / zinc ion binding
Coordinates
chrA06:-:6585883..6587585
Molecular Weight (calculated)
37023.0 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.833
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNNVGKKRQ VVDERYTKPQ QGLLYMNKDV DFKKVKKLIL DSKLAPCYPG AEETSCHDLE ECPICYLYYP SLNRSRCCLK SICTECFLRM KNPSSSQPTQ
101: CPYCKTSNYA VEYRGGKTKE EKSIEQIEEQ RVIEAKIRIR QKEVEEDEER MQKRLESPSS RTSAVTADTE YGSAAEEDEE TVSSQDSCLT SHPRVSRDGE
201: FDYDLEDIMV MEAIWLSVQE PGSQMNNSPE EDHNVGPLMP SSSSSSPSGG LACAIAVLAE RQQMVGESSS NQNVNISSHN MGPGMCNSSH YNAMDQDSNH
301: YRQATGISDT MRSDLTDDSG TEVSREVTWQ
101: CPYCKTSNYA VEYRGGKTKE EKSIEQIEEQ RVIEAKIRIR QKEVEEDEER MQKRLESPSS RTSAVTADTE YGSAAEEDEE TVSSQDSCLT SHPRVSRDGE
201: FDYDLEDIMV MEAIWLSVQE PGSQMNNSPE EDHNVGPLMP SSSSSSPSGG LACAIAVLAE RQQMVGESSS NQNVNISSHN MGPGMCNSSH YNAMDQDSNH
301: YRQATGISDT MRSDLTDDSG TEVSREVTWQ
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.