CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025999.1-P	Field mustard	nucleus	97.58	97.88
CDY48470	Canola	nucleus	92.45	93.01
AT1G17145.1	Thale cress	nucleus	77.34	76.42
CDY64724	Canola	cytosol	41.09	61.26
CDX79263	Canola	cytosol	22.96	56.72
CDY26864	Canola	nucleus	56.5	50.13
HORVU7Hr1G024070.1	Barley	cytosol	14.5	50.0
VIT_19s0093g00620.t01	Wine grape	nucleus	59.21	49.87
CDY26863	Canola	nucleus	56.19	49.87
CDY52445	Canola	nucleus	59.52	48.4
CDX88446	Canola	nucleus	57.4	47.74
KRH13587	Soybean	nucleus	59.21	45.79
Solyc07g056630.2.1	Tomato	nucleus	58.31	45.73
KRH21787	Soybean	nucleus	58.91	45.24
CDX68014	Canola	cytosol	16.92	45.16
GSMUA_Achr10P...	Banana	nucleus	51.36	43.59
Os06t0154900-01	Rice	nucleus	33.23	41.67
Zm00001d036228_P001	Maize	cytosol	29.31	38.65
GSMUA_AchrUn_...	Banana	nucleus	48.04	38.13
GSMUA_Achr2P20090_001	Banana	nucleus	47.43	37.2
GSMUA_Achr3P17550_001	Banana	nucleus	46.22	36.96
KXG29907	Sorghum	cytosol	45.92	35.43
TraesCS7D01G107500.1	Wheat	nucleus	44.71	35.32
Zm00001d053448_P001	Maize	nucleus	45.92	35.27
HORVU6Hr1G044080.12	Barley	nucleus	44.41	34.59
Os02t0244100-01	Rice	nucleus	44.11	34.52
TraesCS6D01G176900.1	Wheat	cytosol	44.11	34.35
Zm00001d016164_P003	Maize	nucleus	45.02	34.33
TraesCS6B01G215300.1	Wheat	nucleus	43.81	34.2
TraesCS6A01G189300.1	Wheat	nucleus	43.5	33.96
Zm00001d045309_P001	Maize	nucleus	42.9	33.89
EER87870	Sorghum	nucleus	42.6	33.73
TraesCS7B01G010000.2	Wheat	nucleus	44.41	31.96
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	34.14	30.62
HORVU4Hr1G034450.1	Barley	cytosol	16.62	28.21

Protein Annotations

EnsemblPlants:CDY65128	EnsemblPlantsGene:GSBRNA2T00044210001	GO:A0A078JBW2	InterPro:IPR001841	InterPro:Znf_RING	PANTHER:PTHR31315
PANTHER:PTHR31315:SF2	PFscan:PS50089	ProteinID:CDY65128	ProteinID:CDY65128.1	SEG:seg	UniParc:UPI0004EDDC9B
UniProt:A0A078JBW2	MapMan:19.2.2.1.5.3.6	:	:	:	:

Description

BnaA06g38440DBnaA06g38440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBW2]

Coordinates

chrLK034664:-:21289..23577

Molecular Weight (calculated)

37305.4 Da

IEP (calculated)

4.592

GRAVY (calculated)

-0.848

Length

331 amino acids

Sequence
(BLAST)

001: MGNNLGKKRQ VVDERYTKPQ QGLLYMNKDV DFKKVKKLIL DSKLAPCYPG AEETTCHDLE ECPICYLYYP SLNRSRCCLK SICTECFLRM KNPSSSQPTQ
101: CPYCKTSNYA VEYRGGKTKE EKSIEQIEEQ RVIEAKIRIR QKEVEEDEER MQKRLESPSS RTSEVTADTE YGSAAEEDEE TVSSQDSCLT SHPRVSRDGE
201: FDYDLEDIMV MEAIWLSVQQ EPGSQMNNSP EEDHNVGPLM PLSSSSSPSG GLACAIAVLA ERQQMVGESS SNQNVSISSH NMGPGMCNSS HYNAMEQDSN
301: HYRQATGISD TMRSDLTDDS GREVSREVTW Q

Best Arabidopsis Sequence Match ( AT1G17145.1 )
(BLAST)

001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.