Factsheet for Os02t0244100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G215300.1	Wheat	nucleus	86.76	86.56
TraesCS6D01G176900.1	Wheat	cytosol	86.76	86.35
TraesCS6A01G189300.1	Wheat	nucleus	86.05	85.85
HORVU6Hr1G044080.12	Barley	nucleus	85.82	85.41
KXG29907	Sorghum	cytosol	84.4	83.22
Zm00001d053448_P001	Maize	nucleus	83.69	82.13
Zm00001d016164_P003	Maize	nucleus	82.51	80.41
CDY64724	Canola	cytosol	30.26	57.66
GSMUA_Achr2P20090_001	Banana	nucleus	52.96	53.08
GSMUA_Achr3P17550_001	Banana	nucleus	51.77	52.9
GSMUA_Achr10P...	Banana	nucleus	48.7	52.82
GSMUA_AchrUn_...	Banana	nucleus	50.83	51.56
VIT_19s0093g00620.t01	Wine grape	nucleus	44.44	47.84
CDX79263	Canola	cytosol	15.13	47.76
Solyc07g056630.2.1	Tomato	nucleus	47.28	47.39
Os06t0154900-01	Rice	nucleus	29.31	46.97
CDY26864	Canola	nucleus	39.72	45.04
Os06t0652550-00	Rice	nucleus	16.08	45.03
Bra008360.1-P	Field mustard	nucleus	39.48	44.53
AT1G17145.1	Thale cress	nucleus	35.22	44.48
CDY48470	Canola	nucleus	34.52	44.38
CDX68014	Canola	cytosol	13.0	44.35
Bra025999.1-P	Field mustard	nucleus	34.52	44.24
CDY26863	Canola	nucleus	39.01	44.24
CDY65128	Canola	nucleus	34.52	44.11
KRH21787	Soybean	nucleus	43.26	42.46
AT1G78420.1	Thale cress	nucleus	39.95	42.14
KRH13587	Soybean	nucleus	42.55	42.06
CDX88446	Canola	nucleus	39.24	41.71
Bra035036.1-P	Field mustard	nucleus	39.72	41.28
CDY52445	Canola	nucleus	39.72	41.28

Protein Annotations

EnsemblPlants:Os02t0244100-01	EnsemblPlantsGene:Os02g0244100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0016874	InterPro:IPR001841	InterPro:Znf_RING	ncoils:Coil
PANTHER:PTHR31315	PANTHER:PTHR31315:SF2	PFscan:PS50089	ProteinID:BAD28268.1	ProteinID:BAF08328.1	ProteinID:BAS77855.1
SEG:seg	SUPFAM:SSF57850	UniParc:UPI00003CE66A	UniProt:Q6ESV2	MapMan:19.2.2.1.5.3.6	:

Description

GRAIN WEIGHT 2RING-type E3 ubiquitin ligase, Regulation of grain width and weight (Os02t0244100-01)

Coordinates

chr2:+:8115223..8121651

Molecular Weight (calculated)

47144.7 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.553

Length

423 amino acids

Sequence
(BLAST)

001: MGNRIGGRRK AGVEERYTRP QGLYEHRDID QKKLRKLILE AKLAPCYMGA DDAAAAADLE ECPICFLYYP SLNRSKCCSK GICTECFLQM KPTHTAQPTQ
101: CPFCKTPSYA VEYRGVKTKE ERSIEQFEEQ KVIEAQMRMR QQALQDEEDK MKRKQNRCSS SRTITPTKEV EYRDICSTSF SVPSYRCAEQ ETECCSSEPS
201: CSAQTSMRPF HSRHNRDDNI DMNIEDMMVM EAIWRSIQGS IGNPVCGNFM PVTEPSPRER QPFVPAASLE IPHGGGFSCA VAAMAEHQPP SMDFSYMAGS
301: SAFPVFDMFR RPCNIAGGSM CNLESSPESW SGIAPSCSRE VVREEGECSA DHWSEGAEAG TSYAGSDIVA DAGTMPQLPF AENFAMAPSH FRPESIEEQM
401: MFSMALSLAD GHGRTHSQGL AWL

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.