Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65128 | Canola | nucleus | 93.01 | 92.45 |
| AT1G17145.1 | Thale cress | nucleus | 75.99 | 74.63 |
| CDY64724 | Canola | cytosol | 41.64 | 61.71 |
| CDX79263 | Canola | cytosol | 22.19 | 54.48 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 60.49 | 50.64 |
| CDY26864 | Canola | nucleus | 56.84 | 50.13 |
| CDY26863 | Canola | nucleus | 56.53 | 49.87 |
| CDY52445 | Canola | nucleus | 60.49 | 48.89 |
| CDX88446 | Canola | nucleus | 58.36 | 48.24 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 13.98 | 47.92 |
| KRH13587 | Soybean | nucleus | 59.57 | 45.79 |
| Solyc07g056630.2.1 | Tomato | nucleus | 58.05 | 45.26 |
| KRH21787 | Soybean | nucleus | 59.27 | 45.24 |
| GSMUA_Achr10P... | Banana | nucleus | 51.98 | 43.85 |
| CDX68014 | Canola | cytosol | 16.11 | 42.74 |
| Os06t0154900-01 | Rice | nucleus | 33.13 | 41.29 |
| Zm00001d036228_P001 | Maize | cytosol | 29.18 | 38.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.02 | 37.89 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 48.02 | 37.44 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 46.81 | 37.2 |
| KXG29907 | Sorghum | cytosol | 46.5 | 35.66 |
| Zm00001d053448_P001 | Maize | nucleus | 46.5 | 35.5 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 44.98 | 34.82 |
| Zm00001d016164_P003 | Maize | nucleus | 45.9 | 34.79 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 44.68 | 34.67 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 44.68 | 34.67 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 44.07 | 34.61 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 44.68 | 34.59 |
| Os02t0244100-01 | Rice | nucleus | 44.38 | 34.52 |
| EER87870 | Sorghum | nucleus | 42.86 | 33.73 |
| Zm00001d045309_P001 | Maize | nucleus | 42.86 | 33.65 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 43.77 | 31.3 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 33.74 | 30.08 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 16.11 | 27.18 |
Protein Annotations
| EnsemblPlants:CDY48470 | EnsemblPlantsGene:GSBRNA2T00091162001 | GO:A0A078IC82 | InterPro:IPR001841 | InterPro:Znf_RING | PANTHER:PTHR31315 |
| PANTHER:PTHR31315:SF2 | PFscan:PS50089 | ProteinID:CDY48470 | ProteinID:CDY48470.1 | SEG:seg | UniParc:UPI0004EDF140 |
| UniProt:A0A078IC82 | MapMan:19.2.2.1.5.3.6 | : | : | : | : |
Description
BnaC05g13300DBnaC05g13300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC82]
Coordinates
chrLK032775:-:33323..35439
Molecular Weight (calculated)
36923.1 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.836
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKLGKKRQ VVEERYTKPQ QGLLYMNKDV DFKKVKKLIL ESKLAPCYPG AEESSCHDLE ECPICYLYYP SLNRSRCCLK SICTECFLRM KNPTSARPTQ
101: CPYCKTSNYA VEYRGGKTKE EKSIEQIAKQ RVIEAKIRIR QKEVDEEKEE RMQKRLESPS SSRTSEVTAN TAYGSAADED EETVSSQDSC VTSHPRVSRD
201: GEFDYDLEDI MVMEAIWLSV QEPGSQMNNS PEEDHNVGPL MPPSSSSSPS GGLACAIAVL AERQQMVGES SSNQNVNISS HNMGPGMCNS SHYNAMEQDS
301: NHYRQATGIS ESDLTDDSGR EVSREVTWQ
101: CPYCKTSNYA VEYRGGKTKE EKSIEQIAKQ RVIEAKIRIR QKEVDEEKEE RMQKRLESPS SSRTSEVTAN TAYGSAADED EETVSSQDSC VTSHPRVSRD
201: GEFDYDLEDI MVMEAIWLSV QEPGSQMNNS PEEDHNVGPL MPPSSSSSPS GGLACAIAVL AERQQMVGES SSNQNVNISS HNMGPGMCNS SHYNAMEQDS
301: NHYRQATGIS ESDLTDDSGR EVSREVTWQ
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.