Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER87870 | Sorghum | nucleus | 88.78 | 89.0 |
| Zm00001d036228_P001 | Maize | cytosol | 44.63 | 74.5 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 15.99 | 69.79 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 68.74 | 68.74 |
| Os06t0154900-01 | Rice | nucleus | 41.29 | 65.53 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 69.45 | 63.26 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 55.61 | 63.14 |
| GSMUA_Achr10P... | Banana | nucleus | 48.45 | 52.05 |
| CDY64724 | Canola | cytosol | 26.97 | 50.9 |
| Zm00001d046859_P001 | Maize | nucleus | 13.84 | 50.88 |
| Zm00001d046846_P001 | Maize | cytosol | 13.37 | 49.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.49 | 47.72 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 44.39 | 47.33 |
| Solyc07g056630.2.1 | Tomato | nucleus | 47.02 | 46.68 |
| Zm00001d053448_P001 | Maize | nucleus | 47.73 | 46.4 |
| Zm00001d016164_P003 | Maize | nucleus | 47.49 | 45.85 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 44.15 | 44.69 |
| CDY26864 | Canola | nucleus | 39.62 | 44.5 |
| CDY26863 | Canola | nucleus | 39.38 | 44.24 |
| AT1G17145.1 | Thale cress | nucleus | 35.32 | 44.18 |
| CDX79263 | Canola | cytosol | 14.08 | 44.03 |
| Bra008360.1-P | Field mustard | nucleus | 39.14 | 43.73 |
| Bra025999.1-P | Field mustard | nucleus | 34.13 | 43.33 |
| CDY65128 | Canola | nucleus | 33.89 | 42.9 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 43.2 | 42.89 |
| CDY48470 | Canola | nucleus | 33.65 | 42.86 |
| KRH13587 | Soybean | nucleus | 43.44 | 42.52 |
| KRH21787 | Soybean | nucleus | 43.44 | 42.23 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 19.57 | 42.05 |
| AT1G78420.1 | Thale cress | nucleus | 39.14 | 40.9 |
| CDX88446 | Canola | nucleus | 38.66 | 40.7 |
| Bra035036.1-P | Field mustard | nucleus | 38.66 | 39.8 |
| CDY52445 | Canola | nucleus | 38.19 | 39.31 |
| CDX68014 | Canola | cytosol | 10.98 | 37.1 |
Protein Annotations
| EMBL:GQ916633 | EnsemblPlants:Zm00001d045309_P001 | EnsemblPlants:Zm00001d045309_T001 | EnsemblPlantsGene:Zm00001d045309 | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 |
| ProteinID:AQL02006.1 | SEG:seg | UniParc:UPI0001BA0528 | UniProt:D0EY59 | MapMan:19.2.2.1.5.3.6 | : |
Description
GW2
Coordinates
chr9:-:18678409..18682507
Molecular Weight (calculated)
45506.9 Da
IEP (calculated)
4.669
GRAVY (calculated)
-0.550
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNQVGGRRR RRPPVDERYT RPQGLYPHPD IDLRKLRRLI LEAKLAPCHP GADDARADLD ECPICFLFYP SLNRSKCCAK GICTECFLQM KSPTSCKPTQ
101: CPYCKTLNYA VEYRGVKTKE EKGIEQLEEQ RVIEAQIRMR QQEVQDDAER MKNKRTATLG DVVASAQVDS CNTDGASTAV ANSPRGNDVL SSEVQHSELI
201: SRNSEAFKQM RGNNFEVDLE EVMLMEAIWL SIQDQEALGN PGCVSTTPSS IPSRPFDDGD MTTTAEAASS GGFACAVAAL AEQQHMHGES SSASPCQTIR
301: FGTLSRPDRS TTQDLSVAGS SSSDSRVEEP PTSNTHRTIE AAEYSNSNVQ WSEVAEAGTS IAESDGTVEA GVDNSSTSAG SNIDSVSVPD SFEEQMMLAM
401: ALSLVDARAR AGSPGLAWR
101: CPYCKTLNYA VEYRGVKTKE EKGIEQLEEQ RVIEAQIRMR QQEVQDDAER MKNKRTATLG DVVASAQVDS CNTDGASTAV ANSPRGNDVL SSEVQHSELI
201: SRNSEAFKQM RGNNFEVDLE EVMLMEAIWL SIQDQEALGN PGCVSTTPSS IPSRPFDDGD MTTTAEAASS GGFACAVAAL AEQQHMHGES SSASPCQTIR
301: FGTLSRPDRS TTQDLSVAGS SSSDSRVEEP PTSNTHRTIE AAEYSNSNVQ WSEVAEAGTS IAESDGTVEA GVDNSSTSAG SNIDSVSVPD SFEEQMMLAM
401: ALSLVDARAR AGSPGLAWR
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.