CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68014	Canola	cytosol	51.49	55.65
HORVU7Hr1G024070.1	Barley	cytosol	29.85	41.67
CDY64724	Canola	cytosol	56.72	34.23
CDX88446	Canola	nucleus	72.39	24.37
CDY52445	Canola	nucleus	71.64	23.59
CDY26863	Canola	nucleus	64.18	23.06
CDY26864	Canola	nucleus	64.18	23.06
CDY65128	Canola	nucleus	56.72	22.96
AT1G78420.1	Thale cress	nucleus	67.91	22.69
CDY48470	Canola	nucleus	54.48	22.19
VIT_19s0093g00620.t01	Wine grape	nucleus	61.94	21.12
HORVU4Hr1G034450.1	Barley	cytosol	29.85	20.51
Solyc07g056630.2.1	Tomato	nucleus	62.69	19.91
KRH21787	Soybean	nucleus	58.96	18.33
KRH13587	Soybean	nucleus	58.21	18.22
GSMUA_Achr10P...	Banana	nucleus	52.99	18.21
Os06t0154900-01	Rice	nucleus	35.82	18.18
Zm00001d036228_P001	Maize	cytosol	32.84	17.53
GSMUA_Achr2P20090_001	Banana	nucleus	54.48	17.3
GSMUA_Achr3P17550_001	Banana	nucleus	50.75	16.43
GSMUA_AchrUn_...	Banana	nucleus	50.75	16.31
KXG29907	Sorghum	cytosol	50.0	15.62
TraesCS6B01G215300.1	Wheat	nucleus	49.25	15.57
TraesCS6D01G176900.1	Wheat	cytosol	49.25	15.53
TraesCS6A01G189300.1	Wheat	nucleus	48.51	15.33
Zm00001d053448_P001	Maize	nucleus	49.25	15.31
HORVU6Hr1G044080.12	Barley	nucleus	48.51	15.29
Zm00001d016164_P003	Maize	nucleus	49.25	15.21
Os02t0244100-01	Rice	nucleus	47.76	15.13
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	40.3	14.63
EER87870	Sorghum	nucleus	44.03	14.11
Zm00001d045309_P001	Maize	nucleus	44.03	14.08
TraesCS7D01G107500.1	Wheat	nucleus	43.28	13.84
TraesCS7B01G010000.2	Wheat	nucleus	43.28	12.61

Protein Annotations

EnsemblPlants:CDX79263	EnsemblPlantsGene:GSBRNA2T00131899001	ncoils:Coil	PANTHER:PTHR31315	PANTHER:PTHR31315:SF2	ProteinID:CDX79263
ProteinID:CDX79263.1	SEG:seg	UniParc:UPI0004EDEA51	MapMan:19.2.2.1.5.3.6	:	:

Description

BnaC06g20400D

Coordinates

chrLK031817:+:872761..873822

Molecular Weight (calculated)

15165.2 Da

IEP (calculated)

6.496

GRAVY (calculated)

-0.431

Length

134 amino acids

Sequence
(BLAST)

001: MLELIEIGNK LVGRKRQVVA EKCGWIFYYC VFLNTVRCPF CKTPNYAVEY RGVKTKEEKG IEQVEEQRVI EAKIRMMENE KQDYEDKLQK RMESCSSSIS
101: AMTGEFEQCS ASEPATRSSS SGGLACAIAA LAER

Best Arabidopsis Sequence Match ( AT1G78420.1 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.