Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21787 | Soybean | nucleus | 91.36 | 90.72 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 60.98 | 66.41 |
| CDY64724 | Canola | cytosol | 33.64 | 64.86 |
| AT1G17145.1 | Thale cress | nucleus | 47.9 | 61.19 |
| Solyc07g056630.2.1 | Tomato | nucleus | 59.11 | 59.95 |
| CDY48470 | Canola | nucleus | 45.79 | 59.57 |
| CDY65128 | Canola | nucleus | 45.79 | 59.21 |
| Bra025999.1-P | Field mustard | nucleus | 45.56 | 59.09 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 13.08 | 58.33 |
| CDX79263 | Canola | cytosol | 18.22 | 58.21 |
| CDY26864 | Canola | nucleus | 48.83 | 56.03 |
| GSMUA_Achr10P... | Banana | nucleus | 50.93 | 55.9 |
| Bra008360.1-P | Field mustard | nucleus | 48.83 | 55.73 |
| CDY26863 | Canola | nucleus | 48.36 | 55.5 |
| AT1G78420.1 | Thale cress | nucleus | 50.7 | 54.11 |
| CDX88446 | Canola | nucleus | 48.83 | 52.51 |
| CDY52445 | Canola | nucleus | 49.53 | 52.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.47 | 51.8 |
| Bra035036.1-P | Field mustard | nucleus | 48.83 | 51.35 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 49.07 | 50.72 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 48.36 | 49.05 |
| Os06t0154900-01 | Rice | nucleus | 30.14 | 48.86 |
| Zm00001d036228_P001 | Maize | cytosol | 26.87 | 45.82 |
| KXG29907 | Sorghum | cytosol | 45.09 | 44.99 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 44.63 | 44.94 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 43.93 | 44.87 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 44.39 | 44.81 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 44.39 | 44.81 |
| Zm00001d053448_P001 | Maize | nucleus | 45.09 | 44.78 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 43.93 | 44.24 |
| EER87870 | Sorghum | nucleus | 42.76 | 43.78 |
| Zm00001d016164_P003 | Maize | nucleus | 44.16 | 43.55 |
| Zm00001d045309_P001 | Maize | nucleus | 42.52 | 43.44 |
| Os02t0244100-01 | Rice | nucleus | 42.06 | 42.55 |
| CDX68014 | Canola | cytosol | 11.92 | 41.13 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 43.69 | 40.65 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 34.58 | 40.11 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 14.95 | 32.82 |
Protein Annotations
| EMBL:ACUP02009755 | EnsemblPlants:KRH13587 | EnsemblPlantsGene:GLYMA_15G249000 | EntrezGene:100817758 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | InterPro:IPR001841 | InterPro:Znf_RING | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 |
| PFscan:PS50089 | ProteinID:KRH13586.1 | ProteinID:KRH13587 | ProteinID:KRH13587.1 | ProteinID:KRH13588.1 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI000233BB89 | UniProt:K7MDT1 | MapMan:19.2.2.1.5.3.6 | : | : |
Description
hypothetical protein
Coordinates
chr15:-:47470916..47481064
Molecular Weight (calculated)
47654.5 Da
IEP (calculated)
4.533
GRAVY (calculated)
-0.640
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKLGRRRQ VVDEKYTRPQ GLYNHKDVDH KKLRKLILES KLAPCYPGDE ETTYDREECP ICFLYYPSLN RSRCCTKSIC TECFLQMKVP NSTRPTQCPF
101: CKMANYAVEY RGVKSKEEKG LEQIEEQRVI EAKIRMRQQE LQDEDERMHK RLEMSSSNVN VAVADVEYSS NAVSASSVSV VENDEIVSSQ DSCATSVVRP
201: NATTRTNRDD EFDVDLEDIM VMEAIWLSIQ ENGRQRNLSF SDATSGHYVA DGRYVSSASS ITGPPTGSSS SPSGGLACAI AALAERQQMA GESSMSITDE
301: NMPSFNTLPG SRRFYNRLGR DMAYYPPAEN LNEEPLDEAV AMTRSHGEWD TDHGTPLTET ATSYTNSVTA EDRGELSSLL RSDDIDGSLQ SAPEPIVPES
401: FEEQMMLAMA VSLAEARAMS SGQSASWQ
101: CKMANYAVEY RGVKSKEEKG LEQIEEQRVI EAKIRMRQQE LQDEDERMHK RLEMSSSNVN VAVADVEYSS NAVSASSVSV VENDEIVSSQ DSCATSVVRP
201: NATTRTNRDD EFDVDLEDIM VMEAIWLSIQ ENGRQRNLSF SDATSGHYVA DGRYVSSASS ITGPPTGSSS SPSGGLACAI AALAERQQMA GESSMSITDE
301: NMPSFNTLPG SRRFYNRLGR DMAYYPPAEN LNEEPLDEAV AMTRSHGEWD TDHGTPLTET ATSYTNSVTA EDRGELSSLL RSDDIDGSLQ SAPEPIVPES
401: FEEQMMLAMA VSLAEARAMS SGQSASWQ
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.