CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26863	Canola	nucleus	98.39	98.39
Bra008360.1-P	Field mustard	nucleus	97.32	96.8
CDY64724	Canola	cytosol	50.94	85.59
CDY52445	Canola	nucleus	81.77	74.94
CDX88446	Canola	nucleus	79.09	74.12
AT1G78420.1	Thale cress	nucleus	78.55	73.07
CDX79263	Canola	cytosol	23.06	64.18
CDY48470	Canola	nucleus	50.13	56.84
CDY65128	Canola	nucleus	50.13	56.5
VIT_19s0093g00620.t01	Wine grape	nucleus	58.18	55.22
Solyc07g056630.2.1	Tomato	nucleus	58.71	51.9
CDX68014	Canola	cytosol	17.16	51.61
HORVU7Hr1G024070.1	Barley	cytosol	12.87	50.0
KRH21787	Soybean	nucleus	57.64	49.88
KRH13587	Soybean	nucleus	56.03	48.83
GSMUA_Achr10P...	Banana	nucleus	50.94	48.72
Os06t0154900-01	Rice	nucleus	32.44	45.83
GSMUA_AchrUn_...	Banana	nucleus	50.4	45.08
Zm00001d036228_P001	Maize	cytosol	28.95	43.03
GSMUA_Achr3P17550_001	Banana	nucleus	47.72	43.0
KXG29907	Sorghum	cytosol	49.06	42.66
GSMUA_Achr2P20090_001	Banana	nucleus	47.99	42.42
Zm00001d053448_P001	Maize	nucleus	48.26	41.76
Zm00001d016164_P003	Maize	nucleus	48.53	41.71
TraesCS6D01G176900.1	Wheat	cytosol	47.45	41.65
TraesCS6B01G215300.1	Wheat	nucleus	47.19	41.51
HORVU6Hr1G044080.12	Barley	nucleus	47.19	41.41
TraesCS6A01G189300.1	Wheat	nucleus	46.92	41.27
EER87870	Sorghum	nucleus	45.84	40.91
Os02t0244100-01	Rice	nucleus	45.04	39.72
Zm00001d045309_P001	Maize	nucleus	44.5	39.62
TraesCS7D01G107500.1	Wheat	nucleus	43.43	38.66
TraesCS7B01G010000.2	Wheat	nucleus	43.43	35.22
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	33.51	33.88
HORVU4Hr1G034450.1	Barley	cytosol	16.35	31.28

Protein Annotations

EnsemblPlants:CDY26864	EnsemblPlantsGene:GSBRNA2T00036536001	GO:A0A078GNN5	InterPro:IPR001841	InterPro:Znf_RING	PANTHER:PTHR31315
PANTHER:PTHR31315:SF2	PFscan:PS50089	ProteinID:CDY26864	ProteinID:CDY26864.1	SEG:seg	UniParc:UPI0004EDF2D3
UniProt:A0A078GNN5	MapMan:19.2.2.1.5.3.6	:	:	:	:

Description

BnaA02g18890DBnaA02g18890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNN5]

Coordinates

chrLK032195:+:296932..299270

Molecular Weight (calculated)

42023.2 Da

IEP (calculated)

4.494

GRAVY (calculated)

-0.710

Length

373 amino acids

Sequence
(BLAST)

001: MGNKLVGRRR QAVEEKYTKP QGLYLNKDVD IKKLRKLILE SKLAPCYPGD DEGCHELEEC PICFLYYPSL NRSRCCMKSI CTECFLQMKN PNSARPTQCP
101: FCKTPNYAVE YRGVKSKEEK GIEQVEEQLV IEAKIRMRQK EMQDDEEKMQ KRLESCSSST SAVTGEIEYG SASAMSYNSP MEDAETASSQ NTSVRQRGNR
201: DDVDLEELMV MEAIWLSIQE TEMERSSGSG ETAPCSQYVS EEEPAMPSSC AISALAERQQ MVGESSNHNH NVNVSSYTML PGNCDSYYDV EQEVDDIDHH
301: HNHYHNNTEM GETGSSSYVS SYMNGEGFHN FPPPPPMVIV PESFEEQMMM AMAVSLAEVH ATTTSAPTEV SWQ

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.