Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29907 | Sorghum | cytosol | 94.9 | 95.34 |
| Zm00001d016164_P003 | Maize | nucleus | 92.81 | 92.17 |
| Os02t0244100-01 | Rice | nucleus | 82.13 | 83.69 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 81.21 | 82.35 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 80.74 | 82.08 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 80.51 | 81.84 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 80.05 | 81.18 |
| CDY64724 | Canola | cytosol | 29.93 | 58.11 |
| GSMUA_Achr10P... | Banana | nucleus | 51.04 | 56.41 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 53.83 | 54.98 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 52.67 | 54.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.51 | 53.24 |
| Zm00001d046859_P001 | Maize | nucleus | 13.46 | 50.88 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 46.17 | 50.64 |
| Zm00001d036228_P001 | Maize | cytosol | 29.0 | 49.8 |
| CDX79263 | Canola | cytosol | 15.31 | 49.25 |
| Zm00001d046846_P001 | Maize | cytosol | 12.99 | 49.12 |
| Solyc07g056630.2.1 | Tomato | nucleus | 47.8 | 48.82 |
| CDY26864 | Canola | nucleus | 41.76 | 48.26 |
| Bra008360.1-P | Field mustard | nucleus | 41.76 | 48.0 |
| Zm00001d045309_P001 | Maize | nucleus | 46.4 | 47.73 |
| CDY26863 | Canola | nucleus | 41.3 | 47.72 |
| AT1G17145.1 | Thale cress | nucleus | 36.43 | 46.87 |
| CDY48470 | Canola | nucleus | 35.5 | 46.5 |
| CDY65128 | Canola | nucleus | 35.27 | 45.92 |
| Bra025999.1-P | Field mustard | nucleus | 35.03 | 45.76 |
| KRH21787 | Soybean | nucleus | 45.48 | 45.48 |
| AT1G78420.1 | Thale cress | nucleus | 42.0 | 45.14 |
| KRH13587 | Soybean | nucleus | 44.78 | 45.09 |
| CDX88446 | Canola | nucleus | 41.3 | 44.72 |
| CDY52445 | Canola | nucleus | 42.0 | 44.47 |
| CDX68014 | Canola | cytosol | 12.76 | 44.35 |
| Bra035036.1-P | Field mustard | nucleus | 41.76 | 44.23 |
Protein Annotations
| EnsemblPlants:Zm00001d053448_P001 | EnsemblPlants:Zm00001d053448_T001 | EnsemblPlantsGene:Zm00001d053448 | EntrezGene:100277474 | InterPro:IPR001841 | InterPro:Znf_RING |
| ncoils:Coil | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | PFscan:PS50089 | ProteinID:AQK59470.1 | ProteinID:AQK59472.1 |
| SEG:seg | UniParc:UPI000220DC48 | UniProt:K7UE71 | MapMan:19.2.2.1.5.3.6 | : | : |
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr4:+:231999507..232004280
Molecular Weight (calculated)
47948.5 Da
IEP (calculated)
5.237
GRAVY (calculated)
-0.584
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRIGGRRK PGVEERFTRP QGLYEHKDID QKKLRKLILE AKLAPCYPGA DDAAAGGGDL DLEECPICFL YYPSLNRSKC CSKGICTECF LQMKPTHTAR
101: PTQCPFCKTA NYAVEYRGVK TKEERSIEQF EEQKVIEAQL RMRQKELQDE EAKMKRKQSR CSSSRTVTPT TEVEYRDICS TSFSVPSYQC TEQGNECCSS
201: EPSCSSQANM RPFHSRHNRD DNVDMNLEDM MVMEAIWRSI QQEQGHLVNP VCGSYFPVIE PPSRERQAFV PAAPLEMPHP GGYSCAVAAL AEHQAPSMDF
301: SYMSGSSTYP VFDMIRRPCN MSSGSLCGAE NSSLDTWSGI APSCSREVVR DEGECSADHW SEGAEAGTSY AGSDIMADAG AMQPLPFAEN FAMGPSHFRP
401: ESVEEQMMFS MAVSLAEAHH GRTQAQGLAW L
101: PTQCPFCKTA NYAVEYRGVK TKEERSIEQF EEQKVIEAQL RMRQKELQDE EAKMKRKQSR CSSSRTVTPT TEVEYRDICS TSFSVPSYQC TEQGNECCSS
201: EPSCSSQANM RPFHSRHNRD DNVDMNLEDM MVMEAIWRSI QQEQGHLVNP VCGSYFPVIE PPSRERQAFV PAAPLEMPHP GGYSCAVAAL AEHQAPSMDF
301: SYMSGSSTYP VFDMIRRPCN MSSGSLCGAE NSSLDTWSGI APSCSREVVR DEGECSADHW SEGAEAGTSY AGSDIMADAG AMQPLPFAEN FAMGPSHFRP
401: ESVEEQMMFS MAVSLAEAHH GRTQAQGLAW L
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.