CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52445	Canola	nucleus	89.95	87.96
CDY64724	Canola	cytosol	45.48	81.53
CDY26864	Canola	nucleus	74.12	79.09
CDY26863	Canola	nucleus	72.86	77.75
AT1G78420.1	Thale cress	nucleus	75.88	75.31
CDX79263	Canola	cytosol	24.37	72.39
CDY48470	Canola	nucleus	48.24	58.36
CDY65128	Canola	nucleus	47.74	57.4
VIT_19s0093g00620.t01	Wine grape	nucleus	55.28	55.98
Solyc07g056630.2.1	Tomato	nucleus	55.03	51.9
HORVU7Hr1G024070.1	Barley	cytosol	12.31	51.04
CDX68014	Canola	cytosol	15.83	50.81
GSMUA_Achr10P...	Banana	nucleus	49.25	50.26
KRH21787	Soybean	nucleus	54.02	49.88
KRH13587	Soybean	nucleus	52.51	48.83
Os06t0154900-01	Rice	nucleus	30.4	45.83
GSMUA_AchrUn_...	Banana	nucleus	47.74	45.56
GSMUA_Achr3P17550_001	Banana	nucleus	45.23	43.48
Zm00001d036228_P001	Maize	cytosol	27.14	43.03
GSMUA_Achr2P20090_001	Banana	nucleus	44.72	42.18
KXG29907	Sorghum	cytosol	44.72	41.49
Zm00001d053448_P001	Maize	nucleus	44.72	41.3
Zm00001d016164_P003	Maize	nucleus	44.72	41.01
TraesCS6A01G189300.1	Wheat	nucleus	43.47	40.8
TraesCS6D01G176900.1	Wheat	cytosol	43.47	40.71
TraesCS6B01G215300.1	Wheat	nucleus	43.22	40.57
HORVU6Hr1G044080.12	Barley	nucleus	43.22	40.47
Os02t0244100-01	Rice	nucleus	41.71	39.24
TraesCS7D01G107500.1	Wheat	nucleus	40.95	38.9
Zm00001d045309_P001	Maize	nucleus	40.7	38.66
EER87870	Sorghum	nucleus	39.95	38.04
TraesCS7B01G010000.2	Wheat	nucleus	40.95	35.43
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	32.41	34.96
HORVU4Hr1G034450.1	Barley	cytosol	14.82	30.26

Protein Annotations

EnsemblPlants:CDX88446	EnsemblPlantsGene:GSBRNA2T00147991001	GO:A0A078DGP2	InterPro:IPR001841	InterPro:Znf_RING	PANTHER:PTHR31315
PANTHER:PTHR31315:SF2	PFscan:PS50089	ProteinID:CDX88446	ProteinID:CDX88446.1	SEG:seg	UniParc:UPI0004EE8FCD
MapMan:19.2.2.1.5.3.6	:	:	:	:	:

Description

BnaC06g38900D

Coordinates

chrLK031855:+:1062130..1065071

Molecular Weight (calculated)

44674.0 Da

IEP (calculated)

4.513

GRAVY (calculated)

-0.765

Length

398 amino acids

Sequence
(BLAST)

001: MGNKLVGRKR QVVEERYTKP QGLYVNTDVD IKKLRKLIVE SKLAPCYPGD DESCHELEEC PICFLFYPSL NRSRCCMKSI CTECFLQMKN PNSARPTQCP
101: FCKTPNYAVE YRGVKTKEEK GMEQVEEQRV IEAKIRMRQK EMEDDEEKMQ KRMESSCSSS ASAMTGEMEY GSASAISYND PMEDAESASS QNVSVARQRS
201: RRPQGNRDDE AEADLEELMV MEAIWLSMQE TGMQRDSGGG GVTPFRQYVS EEDHSYAEPA TPSSSSGGLA CAISALAEQR QQIIGESSNH NHNVNVASYS
301: MLPGNCDSYY DIEQDADDID HYHHYNHYQN NTEMGETGSN SSYMNGGESY HNFPLPPPPP LVIAPESFEE QMMMAMAVSL AEVHATTTTS APTEVTWQ

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.