Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 74.62 | 69.78 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 67.18 | 62.09 |
| CDY64724 | Canola | cytosol | 34.87 | 61.26 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 63.33 | 59.66 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 57.44 | 57.0 |
| GSMUA_Achr1P10200_001 | Banana | nucleus | 23.59 | 56.44 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 13.33 | 54.17 |
| AT1G17145.1 | Thale cress | nucleus | 46.41 | 54.03 |
| CDX79263 | Canola | cytosol | 18.21 | 52.99 |
| Solyc07g056630.2.1 | Tomato | nucleus | 56.92 | 52.61 |
| CDY48470 | Canola | nucleus | 43.85 | 51.98 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 56.15 | 51.65 |
| Bra025999.1-P | Field mustard | nucleus | 43.59 | 51.52 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 55.9 | 51.42 |
| CDY65128 | Canola | nucleus | 43.59 | 51.36 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 55.9 | 51.29 |
| Bra008360.1-P | Field mustard | nucleus | 49.23 | 51.2 |
| KXG29907 | Sorghum | cytosol | 56.15 | 51.05 |
| Zm00001d053448_P001 | Maize | nucleus | 56.41 | 51.04 |
| CDY26864 | Canola | nucleus | 48.72 | 50.94 |
| KRH13587 | Soybean | nucleus | 55.9 | 50.93 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 55.38 | 50.82 |
| KRH21787 | Soybean | nucleus | 55.9 | 50.58 |
| CDY26863 | Canola | nucleus | 48.21 | 50.4 |
| Zm00001d016164_P003 | Maize | nucleus | 55.9 | 50.23 |
| CDX88446 | Canola | nucleus | 50.26 | 49.25 |
| Os02t0244100-01 | Rice | nucleus | 52.82 | 48.7 |
| Bra035036.1-P | Field mustard | nucleus | 50.77 | 48.65 |
| Zm00001d045309_P001 | Maize | nucleus | 52.05 | 48.45 |
| CDY52445 | Canola | nucleus | 50.51 | 48.4 |
| EER87870 | Sorghum | nucleus | 51.79 | 48.33 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 51.79 | 48.21 |
| AT1G78420.1 | Thale cress | nucleus | 49.49 | 48.13 |
| Os06t0154900-01 | Rice | nucleus | 32.31 | 47.73 |
| Zm00001d036228_P001 | Maize | cytosol | 29.74 | 46.22 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 51.54 | 43.7 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 40.51 | 42.82 |
| CDX68014 | Canola | cytosol | 12.56 | 39.52 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 16.15 | 32.31 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P21580_001 | EnsemblPlants:GSMUA_Achr10T21580_001 | EnsemblPlantsGene:GSMUA_Achr10G21580_001 | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | SEG:seg |
| UniParc:UPI00029699C9 | UniProt:M0RK83 | MapMan:19.2.2.1.5.3.6 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G21580_001]
Coordinates
chr10:+:27139002..27143329
Molecular Weight (calculated)
42901.5 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.548
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKMGRRRQ VVDEKYTRPQ GLYVLKDIDH KKLRKLILES KLAPCYPGLE DYSFTLEECP ICFLYYPSLN RSRCCMKGIC TECFLQMKPP HSTRPTQCPF
101: CKTSNYAVEY RGAKTKEEKG MEQVEEQKVI EAQIRIRQKE IQDEAERMNK RQSISSSSRI MTPTDVRYHD TYDTSISVPP LKCTRQSIDF GSSQASCSAP
201: ATTRFSQMRQ NRDDNFDLDL EDIMVMEAIW LSIQEQGSQG NPGCGGSSLP GPSTSGEWYN LHRTAPAKLS SSGGLACAAA ALAERQHMNG DAAATNAAAV
301: LRDGGSELPR EEFGECSTDQ WSEVAEAGTS YAGSDGMVEA GAAAMSLSEG TNMASGLSVP ESFDEQMMLA MAVSLAEAQA RTSSHGVSWQ
101: CKTSNYAVEY RGAKTKEEKG MEQVEEQKVI EAQIRIRQKE IQDEAERMNK RQSISSSSRI MTPTDVRYHD TYDTSISVPP LKCTRQSIDF GSSQASCSAP
201: ATTRFSQMRQ NRDDNFDLDL EDIMVMEAIW LSIQEQGSQG NPGCGGSSLP GPSTSGEWYN LHRTAPAKLS SSGGLACAAA ALAERQHMNG DAAATNAAAV
301: LRDGGSELPR EEFGECSTDQ WSEVAEAGTS YAGSDGMVEA GAAAMSLSEG TNMASGLSVP ESFDEQMMLA MAVSLAEAQA RTSSHGVSWQ
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.