Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G501600.1 | Wheat | mitochondrion | 52.76 | 58.5 |
| TraesCS7B01G409000.1 | Wheat | mitochondrion | 52.76 | 58.5 |
| TraesCS7D01G489000.1 | Wheat | cytosol | 51.53 | 57.14 |
| Zm00001d046859_P001 | Maize | nucleus | 35.58 | 50.88 |
| Os06t0652550-00 | Rice | nucleus | 46.63 | 50.33 |
| Zm00001d046846_P001 | Maize | cytosol | 34.36 | 49.12 |
| OQU76797 | Sorghum | mitochondrion | 46.63 | 47.5 |
| HORVU7Hr1G112680.2 | Barley | plastid | 48.47 | 38.35 |
| HORVU7Hr1G112810.5 | Barley | cytosol, plastid | 47.24 | 35.48 |
| GSMUA_Achr10P... | Banana | nucleus | 56.44 | 23.59 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 57.67 | 22.71 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 57.67 | 22.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 56.44 | 22.06 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P10200_001 | EnsemblPlants:GSMUA_Achr1T10200_001 | EnsemblPlantsGene:GSMUA_Achr1G10200_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR31315 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI00029685E5 | UniProt:M0RYM9 | MapMan:19.2.2.1.5.3.6 | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G10200_001]
Coordinates
chr1:+:7703645..7705725
Molecular Weight (calculated)
19086.1 Da
IEP (calculated)
8.318
GRAVY (calculated)
-0.642
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRISGSRR RPVEERLTRP QRILRQPTDL DYKKLRKLIL ARKLAPCFDA LDEVPHHPRD LEECPICFFY YPSLNRSRCC SKGICTECFL QMKPSDASRP
101: VQCPFCKTSW YAVEYRGART EEEKDLELAE EQKVTEAKLR MQHEYEIVGQ VIPSGESPLL FKF
101: VQCPFCKTSW YAVEYRGART EEEKDLELAE EQKVTEAKLR MQHEYEIVGQ VIPSGESPLL FKF
001: MGNKLGRKRQ IVDERYTKPQ QGLYMSKDVD IKKLKKLILE SKLAPCYPGL EETPSSHHDL EECPICFLYY PSLNRSRCCM KSICTECFLR MKSPNSAQPT
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
101: QCPFCKTSNY AVEYRGGKTK EEKSFEQIEE QRVIEAKIRM RQKEVEDDEE RMQKRLESYS SSSSTSAATL DTEYGSAAED DEEIVSSQES CLPSHHPQVT
201: RDGQFDFDLE DIMVMEAIWL SMQEPGIQRN TSPDDISEKD RNEEPSTPSS SSPSGGLACA IAVLAERQQM VGVSSSNQNV NLASQNLVPD NGNNSHYNAI
301: EQDSNHYLQG AGISYTRSDM TDDSGGETSR EVTWQ
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q940G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.