CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046859_P001	Maize	nucleus	51.88	72.81
Zm00001d046846_P001	Maize	cytosol	51.25	71.93
TraesCS7D01G489000.1	Wheat	cytosol	60.62	65.99
TraesCS7B01G409000.1	Wheat	mitochondrion	60.0	65.31
Os06t0652550-00	Rice	nucleus	60.0	63.58
TraesCS7A01G501600.1	Wheat	mitochondrion	58.12	63.27
GSMUA_Achr1P10200_001	Banana	nucleus	47.5	46.63
HORVU7Hr1G112680.2	Barley	plastid	51.88	40.29
HORVU7Hr1G112810.5	Barley	cytosol, plastid	50.0	36.87
KXG29907	Sorghum	cytosol	46.88	17.48
EER87870	Sorghum	nucleus	45.62	17.46

Protein Annotations

EnsemblPlants:OQU76797	EnsemblPlantsGene:SORBI_3010G212350	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31315	PANTHER:PTHR31315:SF7	PFscan:PS50089	ProteinID:OQU76797	ProteinID:OQU76797.1
SUPFAM:SSF57850	UniParc:UPI0009DC8452	UniProt:A0A1W0VU30	MapMan:19.2.2.1.5.3.6	:	:

Description

hypothetical protein

Coordinates

chr10:+:55544172..55546379

Molecular Weight (calculated)

18136.0 Da

IEP (calculated)

8.826

GRAVY (calculated)

-0.509

Length

160 amino acids

Sequence
(BLAST)

001: MGNVVFGVQL RRRRLPAVEE RLTRPRRLVR ELPDLDAGRL RRFIRSGDLA PCFDPAEDAG DDGLTEDCPI CFFFYPSLNR SKCCGKGICT ECFLQLMPSK
101: TSKVVHCPFC KTKAYAIEYQ GQGAQMTSGK KIKQEGEPNV NETKLRVHSK SQITDEIIRH

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.