Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G409000.1 | Wheat | mitochondrion | 56.8 | 79.59 |
| TraesCS7A01G501600.1 | Wheat | mitochondrion | 55.83 | 78.23 |
| TraesCS7D01G489000.1 | Wheat | cytosol | 54.85 | 76.87 |
| HORVU7Hr1G112810.5 | Barley | cytosol, plastid | 71.36 | 67.74 |
| Os06t0652550-00 | Rice | nucleus | 44.66 | 60.93 |
| Zm00001d046859_P001 | Maize | nucleus | 31.07 | 56.14 |
| Zm00001d046846_P001 | Maize | cytosol | 30.1 | 54.39 |
| OQU76797 | Sorghum | mitochondrion | 40.29 | 51.88 |
| GSMUA_Achr1P10200_001 | Banana | nucleus | 38.35 | 48.47 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 7.28 | 15.62 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 28.16 | 13.65 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 18.45 | 10.3 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 6.8 | 7.18 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G112680.2 | EnsemblPlantsGene:HORVU7Hr1G112680 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF7 | PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 |
| UniParc:UPI000B46B512 | UniProt:A0A287XUE2 | MapMan:19.2.2.1.5.3.6 | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:635423775..635425298
Molecular Weight (calculated)
22592.2 Da
IEP (calculated)
10.419
GRAVY (calculated)
-0.548
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: ADQKAATHPP TATSRSPPST PAGRQAAAMR LRRDYKPGSG RMSKPATPPR LPLARIATTM GNAALRGPAV EERLTQPRRL VRQLSDLDSD RLRRLIRSGD
101: LAPCFDASDE DARAVECPIC LQFYPSLNRS NCCGKGICTE CFLQLMPSKA SRAVHCPFCK TAAFAVEYRG ARTLSEKKLQ REKKSNAHEV ATRIHSKNTC
201: GYILAP
101: LAPCFDASDE DARAVECPIC LQFYPSLNRS NCCGKGICTE CFLQLMPSKA SRAVHCPFCK TAAFAVEYRG ARTLSEKKLQ REKKSNAHEV ATRIHSKNTC
201: GYILAP
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.