Factsheet for Os06t0154900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G024070.1	Barley	cytosol	28.03	77.08
Zm00001d036228_P001	Maize	cytosol	59.47	62.55
CDY64724	Canola	cytosol	42.42	50.45
Os06t0652550-00	Rice	nucleus	27.27	47.68
HORVU4Hr1G034450.1	Barley	cytosol	34.47	46.67
EER87870	Sorghum	nucleus	66.67	42.11
TraesCS7D01G107500.1	Wheat	nucleus	65.91	41.53
Zm00001d045309_P001	Maize	nucleus	65.53	41.29
TraesCS7B01G010000.2	Wheat	nucleus	66.29	38.04
CDX79263	Canola	cytosol	18.18	35.82
CDX68014	Canola	cytosol	16.29	34.68
AT1G17145.1	Thale cress	nucleus	43.18	34.03
Bra025999.1-P	Field mustard	nucleus	42.05	33.64
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	46.97	33.6
CDY65128	Canola	nucleus	41.67	33.23
CDY48470	Canola	nucleus	41.29	33.13
VIT_19s0093g00620.t01	Wine grape	nucleus	48.48	32.57
CDY26864	Canola	nucleus	45.83	32.44
CDY26863	Canola	nucleus	45.83	32.44
GSMUA_Achr10P...	Banana	nucleus	47.73	32.31
Bra008360.1-P	Field mustard	nucleus	45.83	32.27
GSMUA_AchrUn_...	Banana	nucleus	48.86	30.94
GSMUA_Achr3P17550_001	Banana	nucleus	48.11	30.68
AT1G78420.1	Thale cress	nucleus	46.21	30.42
CDX88446	Canola	nucleus	45.83	30.4
Solyc07g056630.2.1	Tomato	nucleus	48.48	30.33
KRH13587	Soybean	nucleus	48.86	30.14
CDY52445	Canola	nucleus	45.83	29.73
KRH21787	Soybean	nucleus	48.48	29.7
Bra035036.1-P	Field mustard	nucleus	45.45	29.48
Os02t0244100-01	Rice	nucleus	46.97	29.31
GSMUA_Achr2P20090_001	Banana	nucleus	46.59	29.15

Protein Annotations

EnsemblPlants:Os06t0154900-01	EnsemblPlantsGene:Os06g0154900	ncoils:Coil	PANTHER:PTHR31315	PANTHER:PTHR31315:SF2	ProteinID:BAS96228.1
SEG:seg	UniParc:UPI000393A53C	UniProt:A0A0P0WT60	MapMan:19.2.2.1.5.3.6	:	:

Description

Similar to RING-type E3 ubiquitin ligase. (Os06t0154900-01);Similar to F3F9.7. (Os06t0154900-02)

Coordinates

chr6:+:2832490..2836293

Molecular Weight (calculated)

29891.1 Da

IEP (calculated)

8.162

GRAVY (calculated)

-0.533

Length

264 amino acids

Sequence
(BLAST)

001: MGNQVGGRRR RRPAVEERYT RPQGLYPHPD IDLKKLRRLI VEAKLAPCFP GSDDPRADLE ECPICFLFYP SLNRSKCCAK GICTECFLQM RTPTSCRPTQ
101: CPYCKMASYA VEYRGVKTKE EKGTEQIEEQ RVIEAQIRMR QQELQDDAER MKKKQAAALT DVVTTAQVEH CDTGGASTTV KSSGQGSDML SSQVQHAELL
201: LKTSERLKQM RFVLLTELCL IFCKSSCLLL HQCNLDQSHD SISMTDYRLR SEMSISGPSN PQIV

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.