CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79263	Canola	cytosol	34.23	56.72
CDY26864	Canola	nucleus	85.59	50.94
CDY26863	Canola	nucleus	85.59	50.94
HORVU7Hr1G024070.1	Barley	cytosol	21.17	48.96
CDX68014	Canola	cytosol	27.03	48.39
CDX88446	Canola	nucleus	81.53	45.48
AT1G78420.1	Thale cress	nucleus	81.08	44.89
CDY52445	Canola	nucleus	81.08	44.23
Zm00001d036228_P001	Maize	cytosol	48.2	42.63
Os06t0154900-01	Rice	nucleus	50.45	42.42
CDY48470	Canola	nucleus	61.71	41.64
CDY65128	Canola	nucleus	61.26	41.09
VIT_19s0093g00620.t01	Wine grape	nucleus	65.77	37.15
GSMUA_Achr10P...	Banana	nucleus	61.26	34.87
Solyc07g056630.2.1	Tomato	nucleus	66.22	34.83
KRH21787	Soybean	nucleus	66.22	34.11
KRH13587	Soybean	nucleus	64.86	33.64
GSMUA_Achr3P17550_001	Banana	nucleus	58.11	31.16
TraesCS6B01G215300.1	Wheat	nucleus	59.46	31.13
HORVU6Hr1G044080.12	Barley	nucleus	59.46	31.06
TraesCS6D01G176900.1	Wheat	cytosol	59.46	31.06
TraesCS6A01G189300.1	Wheat	nucleus	59.01	30.9
GSMUA_AchrUn_...	Banana	nucleus	57.66	30.7
GSMUA_Achr2P20090_001	Banana	nucleus	58.11	30.57
KXG29907	Sorghum	cytosol	58.56	30.3
Os02t0244100-01	Rice	nucleus	57.66	30.26
Zm00001d016164_P003	Maize	nucleus	58.56	29.95
Zm00001d053448_P001	Maize	nucleus	58.11	29.93
EER87870	Sorghum	nucleus	52.7	27.99
TraesCS7D01G107500.1	Wheat	nucleus	51.8	27.45
Zm00001d045309_P001	Maize	nucleus	50.9	26.97
HORVU4Hr1G034450.1	Barley	cytosol	22.52	25.64
TraesCS7B01G010000.2	Wheat	nucleus	51.8	25.0
HORVU7Hr1G023990.18	Barley	cytosol, peroxisome, plastid	35.14	21.14

Protein Annotations

EnsemblPlants:CDY64724	EnsemblPlantsGene:GSBRNA2T00042619001	GO:A0A078JDJ1	InterPro:IPR001841	InterPro:Znf_RING	PANTHER:PTHR31315
PANTHER:PTHR31315:SF2	PFscan:PS50089	ProteinID:CDY64724	ProteinID:CDY64724.1	UniParc:UPI0004EEAB24	UniProt:A0A078JDJ1
MapMan:19.2.2.1.5.3.6	:	:	:	:	:

Description

BnaCnng44700DBnaCnng44700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDJ1]

Coordinates

chrLK034532:+:27756..29120

Molecular Weight (calculated)

25424.5 Da

IEP (calculated)

7.433

GRAVY (calculated)

-0.641

Length

222 amino acids

Sequence
(BLAST)

001: MGNKLVGRRR QAVEEKYTKP QGLYVNNDVD IKKLRKLILE SKLAPCYPGD DESCHELEEC PICFLYYPSL NRSRCCMKSI CTECFLQMKN PNLARPTQCP
101: FCKTPNYAVE YRGVKSKEEK GIEQVEEQRV IEAKIRMRQK EMQDDEEKMQ KRLESCSSST SAMAGEVEYG SASAMSYNSP MEDAETASSQ NTSVRQRGSR
201: SVFPLDCSLF FFVKFCNEVM LA

Best Arabidopsis Sequence Match ( AT1G78420.2 )
(BLAST)

001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.