Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29907 | Sorghum | cytosol | 94.01 | 95.1 |
| Zm00001d053448_P001 | Maize | nucleus | 92.17 | 92.81 |
| Os02t0244100-01 | Rice | nucleus | 80.41 | 82.51 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 79.95 | 81.65 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 79.49 | 81.37 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 79.26 | 81.13 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 78.57 | 80.24 |
| CDY64724 | Canola | cytosol | 29.95 | 58.56 |
| GSMUA_Achr10P... | Banana | nucleus | 50.23 | 55.9 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 52.53 | 54.03 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 51.38 | 53.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.0 | 52.04 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 45.16 | 49.87 |
| Zm00001d036228_P001 | Maize | cytosol | 28.57 | 49.4 |
| CDX79263 | Canola | cytosol | 15.21 | 49.25 |
| Zm00001d046859_P001 | Maize | nucleus | 12.9 | 49.12 |
| CDY26864 | Canola | nucleus | 41.71 | 48.53 |
| Bra008360.1-P | Field mustard | nucleus | 41.71 | 48.27 |
| CDY26863 | Canola | nucleus | 41.24 | 47.99 |
| Solyc07g056630.2.1 | Tomato | nucleus | 46.54 | 47.87 |
| Zm00001d045309_P001 | Maize | nucleus | 45.85 | 47.49 |
| Zm00001d046846_P001 | Maize | cytosol | 12.44 | 47.37 |
| AT1G17145.1 | Thale cress | nucleus | 35.71 | 46.27 |
| CDY48470 | Canola | nucleus | 34.79 | 45.9 |
| Bra025999.1-P | Field mustard | nucleus | 34.33 | 45.15 |
| AT1G78420.1 | Thale cress | nucleus | 41.71 | 45.14 |
| CDY65128 | Canola | nucleus | 34.33 | 45.02 |
| CDX88446 | Canola | nucleus | 41.01 | 44.72 |
| CDY52445 | Canola | nucleus | 41.94 | 44.72 |
| Bra035036.1-P | Field mustard | nucleus | 41.71 | 44.47 |
| CDX68014 | Canola | cytosol | 12.67 | 44.35 |
| KRH21787 | Soybean | nucleus | 44.01 | 44.32 |
| KRH13587 | Soybean | nucleus | 43.55 | 44.16 |
Protein Annotations
| EnsemblPlants:Zm00001d016164_P003 | EnsemblPlants:Zm00001d016164_T003 | EnsemblPlantsGene:Zm00001d016164 | EntrezGene:100276421 | InterPro:IPR001841 | InterPro:Znf_RING |
| ncoils:Coil | PANTHER:PTHR31315 | PANTHER:PTHR31315:SF2 | PFscan:PS50089 | ProteinID:AQK70152.1 | SEG:seg |
| SUPFAM:SSF57850 | UniParc:UPI0008432A9F | UniProt:A0A1D6H5Q5 | MapMan:19.2.2.1.5.3.6 | : | : |
Description
GW2
Coordinates
chr5:+:147975478..147981136
Molecular Weight (calculated)
48618.5 Da
IEP (calculated)
5.818
GRAVY (calculated)
-0.602
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRIGGRRK SGVEERFTRP QGLYDHKDID QKKLRKLILE AKLAPCYPGA DDAAPGGGDL EECPICFLYY PSLNRSKCCS KGICTECFLQ MKPTHTARPT
101: QCPFCKTPNY AVEYRGVKTK EERSIEQFLM YNILQEEQKV IEAQLRMRQK ELQDEEAKMR RKQGRCSSSR TVTPTTEVEY RDICSTSFSV PSYQCTEQGN
201: ECCSSEPSCS SQANRRPFHS RHNRDDNVDM NLENMMVMEA IWRSIQEQGH LVNPVCGSYF PVIEPPSRER QAFLPAAPLE MPHPGGYSCV AALAEHQPPS
301: MDFSYMAGSS TYPVFDMIRR PCNMSSGSLC SVENSSLDTW SGMAPNCSRG VVREEGECST DHWSEGAEAG TSYAGSDIMV DAGAMQPLPF AENFTMAPSH
401: FRPESIEEQM MFSMAVSLAE GHHGRTQAQG LAWL
101: QCPFCKTPNY AVEYRGVKTK EERSIEQFLM YNILQEEQKV IEAQLRMRQK ELQDEEAKMR RKQGRCSSSR TVTPTTEVEY RDICSTSFSV PSYQCTEQGN
201: ECCSSEPSCS SQANRRPFHS RHNRDDNVDM NLENMMVMEA IWRSIQEQGH LVNPVCGSYF PVIEPPSRER QAFLPAAPLE MPHPGGYSCV AALAEHQPPS
301: MDFSYMAGSS TYPVFDMIRR PCNMSSGSLC SVENSSLDTW SGMAPNCSRG VVREEGECST DHWSEGAEAG TSYAGSDIMV DAGAMQPLPF AENFTMAPSH
401: FRPESIEEQM MFSMAVSLAE GHHGRTQAQG LAWL
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.