Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26863 | Canola | nucleus | 97.33 | 97.86 |
| CDY26864 | Canola | nucleus | 96.8 | 97.32 |
| Bra035036.1-P | Field mustard | nucleus | 82.67 | 76.17 |
| AT1G78420.1 | Thale cress | nucleus | 78.93 | 73.82 |
| Bra025999.1-P | Field mustard | nucleus | 49.6 | 56.36 |
| VIT_19s0093g00620.t01 | Wine grape | nucleus | 57.6 | 54.96 |
| Solyc07g056630.2.1 | Tomato | nucleus | 58.4 | 51.9 |
| HORVU7Hr1G024070.1 | Barley | cytosol | 12.8 | 50.0 |
| KRH21787 | Soybean | nucleus | 57.33 | 49.88 |
| GSMUA_Achr10P... | Banana | nucleus | 51.2 | 49.23 |
| KRH13587 | Soybean | nucleus | 55.73 | 48.83 |
| Os06t0154900-01 | Rice | nucleus | 32.27 | 45.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.13 | 45.08 |
| Zm00001d036228_P001 | Maize | cytosol | 28.8 | 43.03 |
| GSMUA_Achr3P17550_001 | Banana | nucleus | 47.2 | 42.75 |
| KXG29907 | Sorghum | cytosol | 48.8 | 42.66 |
| GSMUA_Achr2P20090_001 | Banana | nucleus | 47.47 | 42.18 |
| Zm00001d053448_P001 | Maize | nucleus | 48.0 | 41.76 |
| Zm00001d016164_P003 | Maize | nucleus | 48.27 | 41.71 |
| TraesCS6B01G215300.1 | Wheat | nucleus | 46.67 | 41.27 |
| TraesCS6D01G176900.1 | Wheat | cytosol | 46.67 | 41.18 |
| HORVU6Hr1G044080.12 | Barley | nucleus | 46.67 | 41.18 |
| TraesCS6A01G189300.1 | Wheat | nucleus | 46.4 | 41.04 |
| EER87870 | Sorghum | nucleus | 45.33 | 40.67 |
| Os02t0244100-01 | Rice | nucleus | 44.53 | 39.48 |
| Zm00001d045309_P001 | Maize | nucleus | 43.73 | 39.14 |
| TraesCS7D01G107500.1 | Wheat | nucleus | 43.2 | 38.66 |
| TraesCS7B01G010000.2 | Wheat | nucleus | 43.2 | 35.22 |
| HORVU7Hr1G023990.18 | Barley | cytosol, peroxisome, plastid | 33.33 | 33.88 |
| HORVU4Hr1G034450.1 | Barley | cytosol | 16.27 | 31.28 |
Protein Annotations
Description
AT1G78420 (E=3e-117) | protein binding / zinc ion binding
Coordinates
chrA02:+:15036480..15038579
Molecular Weight (calculated)
42315.5 Da
IEP (calculated)
4.531
GRAVY (calculated)
-0.718
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNKLVGRRR QAVEEKYTKP QGLYVNKDVD IKKLRKLILE SKLAPCYPGD DESCHELEEC PICFLYYPSL NRSRCCMKSI CTECFLQMKN PNSARPTQCP
101: FCKTPNYAVE YRGVKSKEEK GIEQVEEQLV IEAKIRMRQK EMQDDEEKMQ KRLESCSSST SAVTGEIEYG SASAMSYNSP MEDAETASSQ NTSVRQRGNR
201: DDVDLEELMV MEAIWLSIQE TEMERSSGNG EIAPCSQYVS EEEPAMPSSC AISALAERQQ MVGESSNHNH NHNVNVSSYS MLPGNCDSYY DVEQEVDDID
301: HHHNHYHNNT EMGETGSSSY VSSYMNGEGF HNFPPPPPMV IVPESFEEQM MMAMAVSLAE VHATTTSAPT EVSWQ
101: FCKTPNYAVE YRGVKSKEEK GIEQVEEQLV IEAKIRMRQK EMQDDEEKMQ KRLESCSSST SAVTGEIEYG SASAMSYNSP MEDAETASSQ NTSVRQRGNR
201: DDVDLEELMV MEAIWLSIQE TEMERSSGNG EIAPCSQYVS EEEPAMPSSC AISALAERQQ MVGESSNHNH NHNVNVSSYS MLPGNCDSYY DVEQEVDDID
301: HHHNHYHNNT EMGETGSSSY VSSYMNGEGF HNFPPPPPMV IVPESFEEQM MMAMAVSLAE VHATTTSAPT EVSWQ
001: MGNKLGRKRQ VVEERYTKPQ GLYVNKDVDV KKLRKLIVES KLAPCYPGDD ESCHDLEECP ICFLYYPSLN RSRCCMKSIC TECFLQMKNP NSARPTQCPF
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
101: CKTPNYAVEY RGVKSKEEKG IEQVEEQRVI EAKIRMRQKE MQDDEEKMQK RLESCSSSTS AMTGEMEYGS TSAISYNSLM DDGEIAPSQN ASVVRQHSRP
201: RGNREDEVDV DLEELMVMEA IWLSVQETGT QRNSASGEIT SSRQYVTDNH SYVSSPPRVT PIVEPATPSS SSGGLSCAIS ALAERQMVGE SSSHNHNHNV
301: NVSSYSMLPG NCDSYYDIEQ EVDGIDNHHH HRHHYEMGET GSSNSYVSSY MTGEGFHNFP PPPPLVIVPE SFEEQMMMAM AVSMAEVHAT TTCAPTEVTW
401: Q
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93YV5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.