Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G019400.1 | Wheat | cytosol | 25.43 | 56.77 |
| TraesCSU01G094900.1 | Wheat | cytosol | 16.76 | 38.93 |
| TraesCSU01G095200.1 | Wheat | cytosol | 15.9 | 38.46 |
| TraesCSU01G018500.1 | Wheat | cytosol | 21.97 | 38.19 |
| TraesCSU01G018900.1 | Wheat | endoplasmic reticulum, extracellular | 27.17 | 37.6 |
| TraesCS1D01G427100.1 | Wheat | cytosol | 23.12 | 35.24 |
| CDX79728 | Canola | cytosol | 17.34 | 26.43 |
| TraesCSU01G095100.1 | Wheat | cytosol | 16.76 | 24.07 |
| TraesCSU01G124300.1 | Wheat | cytosol | 20.52 | 23.67 |
| TraesCSU01G140400.1 | Wheat | nucleus | 26.3 | 23.1 |
| TraesCSU01G125900.1 | Wheat | cytosol | 20.23 | 22.44 |
Protein Annotations
| EnsemblPlants:TraesCSU01G035100.1 | EnsemblPlantsGene:TraesCSU01G035100 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | ncoils:Coil | PANTHER:PTHR45095 |
| PANTHER:PTHR45095:SF2 | PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | SEG:seg | SMART:SM00213 |
| SUPFAM:SSF54236 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:30184440..30187322
Molecular Weight (calculated)
38756.7 Da
IEP (calculated)
8.745
GRAVY (calculated)
-0.381
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKEVSSQNN ADQVDIPGDL TAELRKLKHA YETLSSNREK EASAQLAVKD FLWNQLRTMD RDHMALLRIK EVEAAQATEA AQKRQQSIEE LQVAARKKDD
101: EIARLRAQVV VAENKVTSQK RRRLGCTFKI FVKIPTLDGK TIALEVSDSD TIFSVKAKIQ DKEGIPAGQQ RLMYINTLLV GSCALKDQNI QIQEEDILDL
201: VIRGMHIFVK VRAGKSAVET VTLEVESSDT LQSVKAKIFD QTCMPPGGHR LFLSGKLLED SCTLADYNIE NDSILDSDVR SPWPSEMLRL SVKTPTSMSS
301: SMCACARRRS TISRQRFMLS WAFPRMSSAS CRVGSTESRL RMGNPC
101: EIARLRAQVV VAENKVTSQK RRRLGCTFKI FVKIPTLDGK TIALEVSDSD TIFSVKAKIQ DKEGIPAGQQ RLMYINTLLV GSCALKDQNI QIQEEDILDL
201: VIRGMHIFVK VRAGKSAVET VTLEVESSDT LQSVKAKIFD QTCMPPGGHR LFLSGKLLED SCTLADYNIE NDSILDSDVR SPWPSEMLRL SVKTPTSMSS
301: SMCACARRRS TISRQRFMLS WAFPRMSSAS CRVGSTESRL RMGNPC
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGF
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGF
Arabidopsis Description
UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.