Factsheet for VIT_11s0016g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090109	Potato	plasma membrane	73.86	73.68
Solyc07g005540.1.1	Tomato	plasma membrane	73.51	73.33
KRH72299	Soybean	plasma membrane	73.39	73.3
KRH54956	Soybean	plasma membrane	72.8	72.55
AT2G24230.1	Thale cress	plasma membrane	71.16	71.16
KRH26100	Soybean	plasma membrane	59.79	70.05
CDY67752	Canola	plasma membrane	67.64	69.69
Bra032115.1-P	Field mustard	plasma membrane	69.28	69.45
CDY39700	Canola	plasma membrane	61.78	67.39
GSMUA_Achr3P00970_001	Banana	plasma membrane, vacuole	51.47	62.62
GSMUA_Achr1P15850_001	Banana	plasma membrane, vacuole	47.83	60.9
GSMUA_Achr7P05250_001	Banana	plasma membrane	48.18	60.35
Os08t0276400-01	Rice	plasma membrane	56.15	57.92
TraesCS5D01G190000.1	Wheat	plasma membrane	55.22	56.68
TraesCS5B01G183000.1	Wheat	plasma membrane	55.33	56.66
Zm00001d050148_P001	Maize	plasma membrane	54.75	55.46
OQU80339	Sorghum	plasma membrane	48.65	53.62
TraesCS5A01G185000.1	Wheat	plasma membrane, plastid	55.45	52.04
HORVU5Hr1G056350.4	Barley	plastid	54.87	50.54
VIT_10s0003g01430.t01	Wine grape	cytosol	28.72	36.62

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100251401	wikigene:100251401	MapMan:18.4.1.7	Gene3D:3.30.200.20	Gene3D:3.80.10.10
EMBL:AM477000	ProteinID:CAN70754	ProteinID:CAN70754.1	ProteinID:CCB62817	ProteinID:CCB62817.1	UniProt:F6I799
EMBL:FN596770	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100251401
wikigene:LOC100251401	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF07714
PFAM:PF13516	PFAM:PF13855	PRINTS:PR00019	PFscan:PS50011	PFscan:PS51450	PANTHER:PTHR44913
InterPro:Prot_kinase_dom	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI00015CDB2A	ArrayExpress:VIT_11s0016g00040	EnsemblPlantsGene:VIT_11s0016g00040	EnsemblPlants:VIT_11s0016g00040.t01	unigene:Vvi.18221
RefSeq:XP_002271577	RefSeq:XP_002271577.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11_random:-:15303..18064

Molecular Weight (calculated)

94063.6 Da

IEP (calculated)

5.673

GRAVY (calculated)

-0.053

Length

853 amino acids

Sequence
(BLAST)

001: MGFGSLGFLL VLTLFFRPLP CQQPNTDGSF VLDFLEKMGL TSSQVYNFSI PFCSWPGVFC DAKEENVVGL VASGLGLSGL IPDTTIGKLS KLQSLDLSNN
101: KITGLSSDFW SLGSLKALNL SSNLISGSLP SNIGNFGVLE ILDLSNNNFS GEIPAAISSL TSLQVLKLDH NGFEWNIPLG ILNCQSLVSM DLSFNRFNGT
201: VPDGFGAAFP KIRILNLAGN EIHGRVSDFL ELKSITVLNI SRNQFQGSVM AVFQEPLQVI DLSKNHFQGH ISQVHSNSSF NWSHLFYLDL SENDLSGEIF
301: HYLNEAQNLK YLNLAHNRFS EQEFPQIGML FSLEYLNLSE TRLTGPIPTD ISQLSSLNTL DLSKNHLSGQ VPLPSIKNLQ IFDISHNNLS GEIPLSLLEK
401: LPWMERFNFS YNNLSLCSSE FSQETLQTSF LGSTDSCPIA ANPAFFKKKT PRHDGLKLAL VLTLSMICLF VGLLFLAFGC RRKTTMWAVK QLSYKEEQTI
501: SGPFSFQTDS TTWVADVKLA TSVPVVIFEK PLLNFTFADL LSATSNFDRG TLLAEGKFGP VYRGFLPGGI HVAVKVLVHG FTMTDQEAAR ELEHLGRIKH
601: PNLVPLTGYC LAGDQRIAIY EYMENGNLQN LLHDLPLGVQ TTEDWSTDTW EEDDNHGIQN VGSEGLLTTW RFRHKIVLGT ARALAFLHHG CSPPIIHRDV
701: KASSVYLDTN LEPRLSDFGL AKIVGSGLED DISRGSQGYM PPELSDPESG TPTPKSDVYG FGVVLLELIT GKKPIGDDYP EKESSLVNWV RGLVRKNQGS
801: RAIDPKIRGT GPDAQMEEAL KIGYLCTADL PSKRPSMQQI VGLLKDIEPV AHR

Best Arabidopsis Sequence Match ( AT2G24230.1 )
(BLAST)

001: MGLGLGFWGY ALFLSLFLKQ SHCQEPNTDG FFVSEFYKQM GLSSSQAYNF SAPFCSWQGL FCDSKNEHVI MLIASGMSLS GQIPDNTIGK LSKLQSLDLS
101: NNKISALPSD FWSLNTLKNL NLSFNKISGS FSSNVGNFGQ LELLDISYNN FSGAIPEAVD SLVSLRVLKL DHNGFQMSIP RGLLGCQSLV SIDLSSNQLE
201: GSLPDGFGSA FPKLETLSLA GNKIHGRDTD FADMKSISFL NISGNQFDGS VTGVFKETLE VADLSKNRFQ GHISSQVDSN WFSLVYLDLS ENELSGVIKN
301: LTLLKKLKHL NLAWNRFNRG MFPRIEMLSG LEYLNLSNTN LSGHIPREIS KLSDLSTLDV SGNHLAGHIP ILSIKNLVAI DVSRNNLTGE IPMSILEKLP
401: WMERFNFSFN NLTFCSGKFS AETLNRSFFG STNSCPIAAN PALFKRKRSV TGGLKLALAV TLSTMCLLIG ALIFVAFGCR RKTKSGEAKD LSVKEEQSIS
501: GPFSFQTDST TWVADVKQAN AVPVVIFEKP LLNITFSDLL SATSNFDRDT LLADGKFGPV YRGFLPGGIH VAVKVLVHGS TLSDQEAARE LEFLGRIKHP
601: NLVPLTGYCI AGDQRIAIYE YMENGNLQNL LHDLPFGVQT TDDWTTDTWE EETDNGTQNI GTEGPVATWR FRHKIALGTA RALAFLHHGC SPPIIHRDVK
701: ASSVYLDQNW EPRLSDFGLA KVFGNGLDDE IIHGSPGYLP PEFLQPEHEL PTPKSDVYCF GVVLFELMTG KKPIEDDYLD EKDTNLVSWV RSLVRKNQAS
801: KAIDPKIQET GSEEQMEEAL KIGYLCTADL PSKRPSMQQV VGLLKDIEPK SNQ

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Source:UniProtKB/Swiss-Prot;Acc:C0LGK9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.